KEGG   Syngnathus scovelli (Gulf pipefish): 125972391
Entry
125972391         CDS       T08785                                 
Symbol
polr2d
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
sscv  Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03020  RNA polymerase
sscv03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sscv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    125972391 (polr2d)
  09124 Replication and repair
   03420 Nucleotide excision repair
    125972391 (polr2d)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sscv03021]
    125972391 (polr2d)
   03400 DNA repair and recombination proteins [BR:sscv03400]
    125972391 (polr2d)
Transcription machinery [BR:sscv03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     125972391 (polr2d)
DNA repair and recombination proteins [BR:sscv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      125972391 (polr2d)
SSDB
Motif
Pfam: RNA_pol_Rpb4 Tfb4
Other DBs
NCBI-GeneID: 125972391
NCBI-ProteinID: XP_049582011
LinkDB
Position
7:194657..195786
AA seq 142 aa
MAAAGSTPHVGDVEEDASQLLFPKEFENSETLLNSEVRMLLEHRKQQNESAEDEQELSEV
FMKTLNYTVRFSRFKNRETITAVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEG
RFEDEELQQILDDIQTKRSFQY
NT seq 429 nt   +upstreamnt  +downstreamnt
atggcggccgcgggttcaacgccgcatgtcggcgatgtagaagaagacgcctcgcagctg
ctctttcccaaagagtttgagaattccgagactctgctgaactcggaggtgcgcatgttg
ctggagcaccgcaagcaacagaacgagagcgccgaggacgagcaggagctctccgaggtc
ttcatgaagaccctcaactacaccgtgcgcttcagccgcttcaagaatcgagagaccatc
acggccgtgcgcagccttctcctccagaaaaagcttcacaagtttgagttggccagtctg
gccaacttgtgtcccgaagcggccgaagaagccaaggccctgatccccagcttggaagga
cgctttgaagacgaggagctgcagcagattctggatgacatccagacgaagagaagcttc
cagtactga

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