Syngnathus scovelli (Gulf pipefish): 125972444
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Entry
125972444 CDS
T08785
Symbol
nectin1b
Name
(RefSeq) nectin cell adhesion molecule 1b isoform X1
KO
K06081
poliovirus receptor-related protein 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03266
Virion - Herpesvirus
sscv04514
Cell adhesion molecule (CAM) interaction
sscv04517
IgSF CAM signaling
sscv04520
Adherens junction
sscv05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
125972444 (nectin1b)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
125972444 (nectin1b)
04517 IgSF CAM signaling
125972444 (nectin1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
125972444 (nectin1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
125972444 (nectin1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sscv04515
]
125972444 (nectin1b)
04090 CD molecules [BR:
sscv04090
]
125972444 (nectin1b)
Cell adhesion molecules [BR:
sscv04515
]
Immunoglobulin superfamily
Nectin family
125972444 (nectin1b)
CD molecules [BR:
sscv04090
]
Proteins
125972444 (nectin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
C2-set_2
Ig_3
V-set
Ig_2
ig
I-set
Ig_PVRIG
Med25_VWA
Motif
Other DBs
NCBI-GeneID:
125972444
NCBI-ProteinID:
XP_049582083
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Position
7:complement(3977392..4100704)
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AA seq
560 aa
AA seq
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MAQLCAGICVLLLVLHVQGNDASQMSSLGGGARSQMVQMDSSKSGFVGSQVELRCIFINS
NPPVKISQVTWQKLLNGTKQNVAIANPALGVSVLAPFKERVSFKQAAVRHRTPSLEDTTI
VFSNLQLYDEAAYICEYTTFPAGNRENMVNLTVFARPMTRMTLTTPTIVARSQRRKMTVA
TCVSANGKPPSVIRWDTRLKGEATFQEIRNQNGTVTVRSNYVIVPGRETHKQKLTCIVTY
RNERFTDSVVLNVQYEPEVKIEGFDANWYLNRQNVQLTCRADANPPVTIYQWKLLNGSLP
SNVEIKNNSLFFKGPVTYDLAGTYVCDATNGIGTRTGIVDVNITEKPMARGPPGGVIGIL
GGIVAIGLIIGVAVTVVMVHRRQQKTRTETDNDLIAVAAVTDSCVTQAAEKPESATRTDL
PPAHKPAPPPPKKKNNDMKGHLTSDDIQVVHLDKDEEMQKLPLQPPYYDMAPSESTPFTD
KPDSGNHPAEPLNPTEYMSHQRDLDLQPECQPAAPPNHPPINFLPQHAYAQPPSNEPMYS
NTGFSATAAPRPQFPKEQSV
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagctgtgtgcggggatttgcgtgctcctcttggtgctgcacgtccaagggaat
gatgcatcacaaatgtcgagcctcggtggaggtgcccgctcccagatggtccagatggac
tcgagcaagtcgggcttcgtgggctcccaggtggagctgcgctgcattttcatcaacagc
aacccgccggtgaagatctcgcaggtgacctggcagaagctgctcaacggcaccaagcag
aacgtggccatcgccaacccggccctgggcgtctccgtgctggcgcccttcaaggagcgc
gtcagcttcaagcaggcggccgtgcgccaccgcacgccctcgctggaggacaccaccatc
gtcttctccaacttgcagctgtacgatgaggcggcgtacatctgcgagtacaccaccttc
ccggcggggaaccgcgagaacatggtcaacctcaccgtctttgctcgcccaatgactcgc
atgaccttgaccacgcccaccatcgtggcccgctcgcagcgccgcaagatgacggtggcc
acatgcgtgtcagccaacggcaagccgcccagcgtcatccgctgggacaccaggctgaag
ggcgaggccaccttccaggagatccgcaaccagaacggcacggtgacggtgcgcagcaac
tacgtgatcgtgcccggccgggagacgcacaagcagaagctgacgtgcatcgtcacctac
cgcaacgagaggttcaccgacagcgtggtgctcaatgtgcaatatgaacccgaggtgaag
atcgagggctttgacgccaactggtacctgaaccgccagaatgttcagctgacctgccgg
gcggacgccaacccgccggtcaccatctaccaatggaaactcttgaacggctcactgccg
agcaacgtggagatcaagaacaacagcttgttcttcaagggccccgtcacctacgacttg
gccggcacgtacgtgtgcgacgccaccaacggcatcggcacacgcaccggcatcgtggac
gtcaacatcaccgagaaaccgatggcgcggggccccccgggcggcgttatcgggatcctc
ggaggcatcgtggccatcggcctcatcatcggcgtggccgtcaccgtggtcatggtccac
cggcgccagcagaagacccgcacggagacagataatgacctcatcgccgtcgcggccgta
actgacagttgcgtgacacaggctgcggagaagccagagtcggccacaaggaccgacctc
ccgccggcccacaagcccgccccgccgccgcccaagaagaagaacaacgacatgaaggga
cacttaacatccgatgacatccaggtggtccatctggacaaagacgaggagatgcagaag
cttcctctccagccgccttattacgacatggcgccctccgagtcgaccccgttcaccgat
aagccggactccgggaaccatccggcagagccgttgaacccgaccgaatacatgagccac
cagcgtgacctggacctgcagcccgagtgtcagccggccgcgcccccgaaccacccgccc
atcaacttcctgccgcagcacgcctacgcccagccgccctccaacgagcccatgtactcc
aacaccggtttctcggccaccgccgccccacgaccacaattccctaaggagcaatcagtg
tga
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