Syngnathus scovelli (Gulf pipefish): 125972501
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Entry
125972501 CDS
T08785
Symbol
hif1al
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha, like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04137
Mitophagy - animal
sscv04140
Autophagy - animal
sscv04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125972501 (hif1al)
04137 Mitophagy - animal
125972501 (hif1al)
04148 Efferocytosis
125972501 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125972501 (hif1al)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
125972501 (hif1al)
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Ortholog
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GFIT
Motif
Pfam:
PAS_11
bHLH_HIF1A
PAS_3
HIF-1
PAS
PAS_4
PAS_9
Motif
Other DBs
NCBI-GeneID:
125972501
NCBI-ProteinID:
XP_049582180
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Position
7:complement(8829147..8837947)
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AA seq
632 aa
AA seq
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MDDIDEANVTVKGSSSEQRKLRSRDAARCRRGKETELFYNLARTLPLPRRVSTHLDKAAI
MRVALSFLRMQRFLHPGAESPRASDEEEEDEDLADILYAQALSGFIVVISAEGDIIYLTD
NVNKHIGIPQLELLGQSVYDFVHPCDQEDLTDLLQHPICSKKLSGGSKQSQINFFLRLKN
TLTNRGRTVNLKSANWKVFHCTGHMRMLDDSSAEPSKNAVMTLLCEPIPHPSSVDFPLDT
YTFLTRHSMDMYFTQCEGRLSELVGYKAEDLIGRSVFEFHHALDSIHVNNSLRTLLAKGQ
VSTSPYRFLASGGGFVWAQTQATVLYNNKTSHAEAVVCLNFVLSAVEQSDVVFSPEQIKS
ESLDKDTDVGERCSSSTQEILLPPTPEDTDTVAPLTGDFVALSFATPQSPSDVPENPQDL
CTPQLRQLLLPIFNPDTPPQSSSWASSSPDPEPSDNSGVGDVNKVEKFFAFWPEDGEKTQ
DNVQQVMDGMDLDMLAPYISMDDDFQLSFFNTVPEANTEIKAELPPELAAINRKRAHNLD
EDALSQLMAENIKRHKHNSNAASPEDRLLLNHALLGSLKESQSDGKLGTKGQSHLLTDRD
PILGSMRGLCDTTSLLLDIFKSQPPPDLSPMS
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atggacgacatagacgaagctaatgtgaccgtcaaagggagcagctcagagcagagaaag
ctgcgttctcgcgatgcggctcgctgcagacggggtaaggagacagagctattctacaac
ctggctcgaaccctacccctacccagacgcgtctcgacacatcttgacaaggcggccatc
atgagggtcgccctcagcttcctccgtatgcaacgcttcctccatcccggggctgagagc
ccaagggcgtccgacgaggaggaggaagatgaggacttggcagatatcctgtacgctcaa
gcgctatctggctttattgtggtgatttcggcagaaggagacatcatttatctgacagac
aacgtcaacaagcacatcggtatcccacagttggagcttctgggtcagagcgtgtatgac
tttgttcatccgtgcgaccaggaagatctcacggacctccttcagcacccaatatgcagt
aaaaaactgagcgggggtagtaagcaaagccagataaatttcttcctgcgattgaagaac
actttgaccaacagggggcgcactgttaacctcaagtctgccaactggaaggtgttccac
tgcacgggtcacatgcgtatgctggatgactcgtctgcagagccctccaagaacgctgtc
atgacactgctttgcgagcccattccccacccatctagcgtggacttccccctagacacg
tacaccttcctcacccggcacagcatggacatgtacttcacacaatgcgagggcaggttg
agcgaactggtgggatacaaggcggaggacctaatcggccgctctgtgtttgagtttcat
cacgcgctggactcaattcatgtcaacaacagcctgcgcacattgctggccaaagggcag
gtgagcaccagcccctaccgcttcctggctagcggcggtggctttgtgtgggcccagact
caagccaccgtcctctacaacaacaaaacgtcacatgccgaggccgtggtctgcctcaac
tttgtgctcagtgccgtggagcagtcggatgtggttttctcccctgagcagatcaaatcc
gaaagcctcgacaaagacaccgatgtgggcgagagatgcagcagcagcacgcaggagatt
cttctcccgcccacaccagaagacacagatactgtcgctccactaacaggagattttgta
gcgctttccttcgccacgccacaaagcccaagtgacgtccccgagaaccctcaggacctt
tgcactccccagctgcgccagctcctccttcccatcttcaaccccgacactcccccgcaa
tcttcatcctgggcatcctcctcaccggatcctgagccgagcgataacagcggtgtgggt
gacgtcaataaggttgagaagttctttgccttttggccagaagatggtgaaaagacacag
gataacgtgcagcaggtgatggatggtatggatctggacatgttggctccctacatctct
atggatgacgacttccagctcagcttcttcaacactgtcccagaggccaatactgaaatt
aaggcagagctaccacctgagctcgccgccatcaataggaaacgggctcacaacctggat
gaggatgctctgtctcagctgatggcagagaacatcaagcgtcacaagcataacagcaat
gccgcctccccggaggaccggctcttgctcaaccatgcgctactgggtagcctgaaggag
agccaatcagatgggaagctgggcaccaaggggcaaagtcatcttcttactgacagggat
cccatcttggggagcatgagaggactctgtgacaccacatcgctgctgctggacatcttc
aaatcccagccgccccctgacttgtcccctatgtcctga
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