Syngnathus scovelli (Gulf pipefish): 125972718
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Entry
125972718 CDS
T08785
Symbol
frem2b
Name
(RefSeq) FRAS1-related extracellular matrix protein 2b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125972718 (frem2b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
sscv04091
]
125972718 (frem2b)
Lectins [BR:
sscv04091
]
C-Type lectins
Lecticans
125972718 (frem2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Cadherin_4
Big_9
DUF6522
DUF3377
Motif
Other DBs
NCBI-GeneID:
125972718
NCBI-ProteinID:
XP_049582618
LinkDB
All DBs
Position
7:complement(802921..843153)
Genome browser
AA seq
3099 aa
AA seq
DB search
MAAICPPRAHASGAAFLTLALVLTTTSDAQFWEHHGLSYVLRSELSEDTVLVANNGIRVP
FGRAAFVDPVNDLVIQVQPGDRCTITVLDNDPLSQTPGTLSPKKFPCEFGPNDVKYSHFG
SRSPARDRVRLQLRYDTQTDTVVVPFMMEVEVVFTQLEVLTKNMPLTVEKLLGTSNPIDR
RVLEFTFDRQAQRCRVTPLSGGGGALPRYGVLLDEGGLATGMTDCDRFTELNLRYRHTFP
LKSPSRDYLPMVVELHDKEGNLLKQEFFQILVRIKEGEENTAPKPSFVAMMMMEVDQFVM
TALTGDMLAAEDAESHPDELIFNITSPLSYEEGYIVSTDDRNLPLSSFYQADLKDFKIAY
KPPAVDSDSERIFQLEFEVVDTEGAVSDPFAFMIVVKPMNTLAPVVTRNTGQLLYEGQSR
PLSSSQNLEISDEDNLDKVKIAVIGGLKHGHLTVLGSGGKFFTPADLNAGQVVYQHDGSD
TYSDNIVFRMTDGSHQVEFLFPITVVPTDDEPPIVNANTGLILFKNQMVPISSLMLSAAD
IDSEDSTIKFIVQPPFSTIGQVLLRQAEAPEDPSTWKFNTEEEMYEKAVSEWLQRDVSDG
KVFYKHVGPHSTSTLLDQFAFRVQDDNDPPNQSEESSFAIKILPVDDLPPELHPEAALHM
TVHEYQLTHLRKKFLRYTDLDSEDRDLKYVILQPPTDTDQNNPVVLGALVLTENPKVEVT
TFTQAQINHHKIAYQPPDLELGITSHVLQFRYKVEDVSGNSADGVFTIFLKPVDNKPPQI
TNSGFTVLERGAHIITSAELYTSDSDTDSKGISFTVARPPLHGHLRLVFTDMTRGDAFSL
EDIDDGRISYVHNGDESTSDSVQIDVSDGVHVVTITVKINVKPIDDETPSVSLPAGTIGS
SIDVLENGATEITSNVIQGRDEDTDDLRLTFIVEDPPSLGEILVRGVPSVTFTQADVING
HVIYAHTGGEVGFTTRQDIFNLTLTDMSDEWAVGGNKITGVRVRVTILPLDSQAPQVFVG
RLFSVVEGEKNAIQTHHIGADDVDTLVEDLLCTIVVQPTSGYVENISPAPGSEKSRSGTA
VSAFTVKDIQRGHIYYVQSIHRGVEPVEDRFTFRCSDGINFSERHFFPISIIPANDEKPE
MYMREFVVMEGMNIVIDTPILNAADADVPADQLTFIITRPPAHGFLLNQLTTGTVPVHNF
TLEQISEASSIVYEHDDSESTQDSFDVLLTDGKFTVQRTAVVMIIPVDDETPRMAINDGL
DVEVGDVKVINGDVLRATDLDSEDGALTYIVRLVPGQGYLQKSTPDGVLQNITLGMNFTQ
DEVDRGMIVYVHNGQEGVRDIFKFDVTDGFNPLIDRYFYVTVGGIDMVFPYVVSKGVSLK
EGGRVTLTTDLLSTSDHNSPDEHLVFTVTRAPVRGHLECTDTPGMPISSFTQLQLAGNKV
YYIHTADDEVKMDSFEFEVTDGYNPVFRTFRISITDVDNKKPVVTVHGLALTEGESKLIT
PFELTAEDRDTADRLLTFTLTQMPVHGRLLFNASRPVASFTKQDLNENMISYKHDGSESA
EDSFSFTVTDGTHADFYVFPDTVFETRKPQLMKIRIVPLDNGVPQIAVNKGAPTLRVLDG
GRLGFVITGKSLKAEDQDSTQGSVLFRITGAPQHGYLVDTSKGNATVSTFTQADINDMRI
CYILRKGDDATNDIFHFSIEDSGGNKLRNQQFRLNWAWISLERKHYVVDEELKFLEVVLK
RRGYLGETSFVSIGTKDGTALKDKDFRGKSQKQVQFNPGQTSATWKVRILPDSEYEVSET
FQIVLSEPVMAVLESPEAASVEIVDPADESSVFIPAAAYDIEEDVGELMVPVRRSGDVGQ
ELMVVCFTQQASATGTVPTSVLSYSDYISRPDDHRSVLRFDKGEVEKPCRVVIIDDSLYE
PDESFNVSLGVPMGGRLGARFPSTRITILPDMDDAPVFYFGHTDYHVDESDGSVEVQVWR
TGSDLSKAASVTVRSRKTEPVSAEAGADYVGISRNLDFAPGVSTQTFRVTILDDLGQPVL
EGPERFELLLQMPVNGLLGAPAKAVVLINDSVSDLPKVQFRDSVYVGEEKSGRIVASVYR
SGDIGHKSTVRCYSRQGTAQVMMDFHERPNTDASIITFLPGEVEKPCVLDLVDDTEHEED
EELRLVLGSPKSDSPFGASVGRQNETLIRIKDDADKSVIKFAETKFSVNEPKERGQVAVV
RIPVVRVGDSSKVSVVRVHTKDGSATSGEDYHPISEELVFEEGDAAHFVELEVLYDGVRE
MREAFTVHLKPDENMVAETQLTKAIIYIEESNSMADVTFPSVPRVLSLLHYDHVGERPDS
LPVAGYPVVCVTACNVKYPDYDKTGSICVSENINNTLTRYRWLVSAPKGPDGVTGPMREL
DFDTFFTSSKLVTLDSVYFQAGSRVQCAARAVNSDGDEGLELSSPVVTISTDEGMCQPRV
AGTVGAEPFSAKLRYTGAEDSEHPNLIKLTVTMPHIDGMLPVVSTRALSNFELTLSPDGT
RVGNHRCSNLLDYSEVKTRHGFLTDATKNPEVLGETAPYQYSAALRGAGTLRFYRNLNLE
ACLWEFVSYYDMSELLEDCGGTIGTDGQVLNLVQSYVTLRVPLHVSYVFHSPVGAGGWQH
FDLQSELRLTFVYDTAILWRDGIGSPPEAELQGALYPSSMRINELGRLVVNFRTEARFRG
LFVARHPASGLTSIVISADHPGLTFNLSLVRSEPTYNQPIQQWTFISDFAVRDYSGTYTV
KLLPCTSPPGLEFTVPPVCNPREPVGFELDIRFQQVSDPVAAEFSLNTEMLLLSKKTLWL
SDGTAGFGQTSDTAFSQGDTIYGRVMVDPVQNLGDSFICNIEKVFLCTGADGYVPKYNPD
GFEFGCLADAPSLLYRFKIIDKAQPETQARTFGNVGFSARLAVDDPAALPLVRQPGSDGF
SLDSSALFQVSAGREWFIHTIYTVRSRDNAKRGIGKRSLEYHTLSRHRRSADVEEIGADN
NRGTNILHIALKRGARQGADLAGNVPVPDGVVPRGLTEAEDGGTATDGPVLIVGVAVGML
LAVLVLVLLVALVRLKRDAKGAAAPSPSGRQAPGDSSEV
NT seq
9300 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaatctgtcctccgcgcgcgcacgcgtccggcgccgcttttctcacgctggcg
ctcgtcctcaccacgacgagcgacgcgcagttctgggagcaccacggactgtcctacgtg
ctgcgctccgagctgtccgaggacacggtgctggtggccaacaacggcatccgggtgcct
ttcgggagggcagcctttgtggatcccgtcaacgacctggtgattcaagttcagcccggt
gacaggtgcaccatcaccgtcttggacaatgaccctctgtctcagacgcccgggactcta
agccccaaaaagttcccgtgtgaatttggccccaacgatgtcaagtactcccactttggc
tcccggagcccggccagggaccgggtgagactgcagctcaggtacgacacgcagacggac
accgttgtggttcctttcatgatggaggtggaggtggtcttcacgcagctggaggtgctg
accaaaaacatgccgctcaccgtggagaagctgctggggaccagcaaccccatcgacagg
cgcgtcttggaatttacatttgacaggcaagcgcagcggtgcagggtcacgcccctgtcc
ggcggcggcggcgccttgcccaggtacggagtcctactggacgagggcggcctggctacg
gggatgacggactgcgaccgattcaccgagctgaacctccgctatcgccacacgttccct
ttgaagtcgccgagccgagattacctcccgatggtggtggagctgcatgacaaggagggc
aacctgctcaagcaggagttcttccaaatcttggtcaggattaaggagggcgaggagaac
acggcgcccaaacccagcttcgtggccatgatgatgatggaagtggaccagtttgttatg
acggccctcaccggcgacatgctggccgccgaggacgccgagtcgcaccccgacgagttg
attttcaacatcacgtcgccgttgtcttacgaggagggctacatcgtcagcacggacgac
aggaatttacccctgagctccttttaccaggctgacctcaaagacttcaaaatcgcctac
aagccgcccgccgtggattcagacagcgagcgcattttccagctggagtttgaggtggtg
gacacggagggggccgtgtcggacccttttgcctttatgatcgtggtcaagcccatgaac
actctggcccccgtggtgaccaggaataccggtcagttgctgtacgagggacagtccagg
ccgttgtccagctcgcaaaacctggaaatcagtgacgaagacaacctggacaaggtcaaa
atcgctgtgatcggcggcctgaaacacggccatttaaccgtcttgggctcaggcgggaaa
tttttcacgccggccgacctgaacgccggccaagtcgtttaccagcacgacggcagcgac
acttacagcgataacattgtttttcgaatgacggacggctcgcaccaggtggagtttctc
ttccccatcaccgtcgtgcccaccgacgacgagccgcccatcgtcaacgccaacaccggt
ttgattctcttcaagaaccaaatggtgcccatttcctccctcatgctcagcgcggcggac
atcgactcggaggactccaccattaaattcatcgtccagccgcccttttccaccatcggc
caggtgctgctgcgccaagccgaggccccggaggacccgtccacctggaagttcaacaca
gaggaggaaatgtatgagaaggcggtgagcgaatggctgcagcgggacgtgagcgacggc
aaagtgttttacaagcacgtggggccgcacagcaccagcacgctcttggatcaattcgcg
ttccgtgtgcaagatgacaacgacccccccaaccagtcggaggagagctcgttcgccatc
aaaatcctccctgtggacgacctcccgcccgagctccacccggaggccgctttgcatatg
accgtgcacgagtatcagctcacgcacttgcgcaagaagttcctacgctacacggatctg
gactcggaggaccgggacctcaaatacgtcattttgcagccgccgacagacacggaccag
aacaaccccgtcgtactgggcgctctggttttgacggaaaaccccaaagtggaagtgaca
actttcactcaggcccaaatcaaccatcacaaaatagcttaccaaccgcccgatctggag
ctgggcatcaccagccacgttttgcagtttcgctacaaagtggaagatgtttcggggaat
agcgccgacggtgtttttaccatcttcttgaagcccgtggacaacaagccgccgcagatt
accaactctggatttacagtgctggagcggggggcgcatatcatcacgagcgctgagctg
tatacctccgattcagacacggacagcaaaggcatctcttttaccgtcgctcggcctccc
ctgcacggacacctccgcttggtgttcacagacatgacgagaggagacgctttcagcctc
gaggacattgacgacgggcgcatttcatacgtacacaacggggacgaatcgacgtccgac
tccgtacaaatagacgtcagcgacggggtccacgtggtcacgattaccgtaaagattaac
gtgaagcccatcgacgacgagactccgtccgttagccttccggcggggaccatcggctcc
tccattgatgtcttggagaacggggcgactgaaattaccagtaatgtcattcaggggcga
gacgaggacacggacgacctccgtttgacctttatcgtggaggacccgccgtctctgggt
gaaattttggtccgaggggtcccttcggtcacgttcacccaggccgacgtcatcaacggc
cacgtgatctacgcccacaccggcggcgaggtgggtttcaccacaagacaagacattttc
aacttaactctgaccgacatgtctgacgagtgggcggtgggaggtaataagattaccggt
gtgagagtgcgcgtgaccattctaccgctggacagccaggccccccaagtctttgtgggg
agactcttttccgtcgtggagggcgagaagaacgccatccagacgcatcacatcggcgcg
gatgacgtggacacgctggtggaagacctcctgtgcaccatcgtcgtgcagcccacgtcg
ggctacgtggagaatatttccccggcccccggctcggaaaaatccaggtccggcacggcc
gtcagcgctttcaccgtcaaggacattcagcggggtcacatttactacgttcaaagcatc
cacagaggagtggagccggtggaggacaggtttacattcagatgctcggacggaatcaat
ttctccgagaggcactttttccccatttccatcatcccggccaacgatgaaaagccagag
atgtacatgagggagtttgtggtcatggagggcatgaacatcgtgatcgatacgcccatt
ctgaacgcggccgacgccgacgtccccgccgaccagctcaccttcatcatcacccgaccc
cccgcgcacggatttctcctcaaccagctcaccacgggcaccgtgcccgtgcacaacttc
accttggagcagatcagcgaggcctccagcatcgtttacgagcacgacgactcggagagc
acgcaggacagcttcgacgtgctcctcaccgacggcaagtttactgtgcagagaacggcg
gtggtcatgattatccccgtggacgacgagacgcccaggatggccatcaacgacggcctg
gacgtggaagtgggcgacgtcaaagtcatcaacggcgacgttttacgagccaccgatctg
gactcggaggacggcgcgctgacttatatcgttcgcctcgtgcccgggcagggctacttg
cagaaaagcacgccagacggcgtgctgcaaaacataaccctcggaatgaatttcacccag
gacgaagtggaccggggtatgatcgtttacgtgcacaacggccaggagggcgttcgcgac
atcttcaaatttgacgtgacggatggcttcaacccgttgattgacagatacttttatgtc
accgtgggcggcatcgacatggtgttcccctacgtggtcagtaaaggcgtgtccctgaag
gaaggcggcagggtcactctgaccacagacctgctcagcaccagcgaccacaacagcccg
gacgagcacttggtcttcaccgtcacccgagctccggtgcgaggccacctggagtgcacg
gacacgcccgggatgcccatttcgtccttcacgcagcttcagctggcgggcaacaaggtc
tactacatccacacggccgacgacgaggtgaaaatggacagcttcgagttcgaggtgacc
gacggctacaaccccgtgttccgcaccttccgcatctccatcacggacgtggacaacaaa
aagccggtggtgacggtgcacggcctggcgctgacggagggcgagagcaagctcatcacg
cctttcgagctcacggcggaggacagagacacggccgaccgactcttgacgttcacgctc
acccagatgcccgttcacggccggctgctcttcaacgccagccggcccgtggcctccttc
accaagcaagacctcaacgagaacatgatcagctacaagcacgacggaagcgagagcgcc
gaggacagcttctccttcacggtgacggacggcacccacgccgacttctacgtcttcccc
gacacggtcttcgagacccgaaagccgcagctcatgaagattcgcatcgtgccgttggac
aacggcgtgccgcagatcgcggtcaacaagggcgcccccaccttgcgggtcctggacggc
gggcgcctcggcttcgtgatcaccggcaaatccctcaaagcggaagaccaagacagcacg
cagggttctgtcctttttcggattacgggcgccccgcagcacggctacctggtggacacc
agcaaaggaaatgccaccgtcagcactttcacgcaagcggacatcaacgacatgcgcatc
tgctacatcttgaggaaaggcgacgacgccaccaacgacatcttccatttctccatcgaa
gacagcggtggcaacaaactgaggaaccagcagttccgcctcaactgggcttggatctca
ttggagaggaagcactatgtggtggacgaggagctcaagttcctggaggtggtcctcaag
cgtcgaggctacctgggcgagacctccttcgttagcatcggcaccaaggacggaacggcg
ctcaaggacaaagatttccgcggcaaatctcagaagcaggtgcagttcaacccgggtcag
acctccgccacctggaaggtgcgcatcctgccagatagcgagtacgaggtgtccgagacc
ttccagatcgttctctccgaacctgtgatggccgtcctcgaatccccggaggccgccagc
gtggagatcgtggaccctgctgacgagtcgtccgtgttcattccggcagccgcgtacgac
atcgaggaggacgtcggcgagctgatggtgccggtgaggcgtagcggcgacgtgggccag
gagctcatggtggtctgcttcactcagcaagcatcagccacgggcacggtgcccaccagc
gtgctgtcctactccgactacatctcgcggccggacgaccaccgcagcgtgctgcgcttc
gacaagggcgaggtggagaagccgtgccgcgtggtgatcatcgacgactcgctctacgag
cccgacgaaagcttcaacgtcagcctcggcgtgcccatggggggccgcctgggcgcccgc
ttccccagcaccagaatcaccatcctgcccgacatggacgacgcccccgtcttctacttc
ggccacaccgactaccacgtggacgagagcgacggctcggtggaggtgcaggtgtggagg
acgggcagcgacctatccaaagccgccagcgtcaccgtgcgctcccgaaagacggagccc
gtctcggccgaagccggagcggattacgtggggatcagccggaatctggactttgcgccg
ggcgtcagcacgcagacgttccgcgtgaccatcctggacgacctgggccagccggtgctg
gagggccccgagaggtttgagcttctgctgcagatgcccgtgaacggcctcctcggggca
cccgccaaggccgtggtcctcatcaacgactccgtgtcagacctgcccaaagtgcagttc
cgcgacagcgtctacgtgggcgaggagaagtccgggcggatcgtggccagcgtgtaccgt
agcggcgacatcggccacaagtccaccgtgcgatgctacagcaggcaaggaacggcgcag
gtcatgatggacttccacgagaggcccaacacggacgcctccatcatcaccttcctacca
ggggaggtggagaagccttgcgtcctggacttggtggatgacacggagcacgaggaagac
gaggagctgcgtctggtgctcggaagtccaaaaagcgattctcccttcggggcgtccgtc
ggacggcagaacgaaacgctcatcaggataaaagatgacgccgacaagtcggtcatcaaa
tttgccgagaccaaattcagcgtgaacgaacccaaagaacgaggccaggtggcggtggtg
agaatccccgtggtgcgcgtgggggactcgtccaaggtgtccgtcgtccgagtgcacacc
aaagatggatctgccacctcgggggaggactaccatcccatctctgaggagctcgtattc
gaagaaggtgacgccgcgcactttgtggagctggaggttttatacgacggggtcagagag
atgagggaagccttcaccgtgcacctcaagccagatgagaacatggtggcagagacgcag
ctgaccaaagccatcatctacatcgaggagagcaacagcatggcagacgtaaccttcccc
tcggtgcccagggtgctttcgctgcttcattacgaccacgtcggcgagcgccccgactct
ctccccgtggccggctaccccgtcgtttgcgtcaccgcgtgcaacgtgaaatacccagac
tacgacaagacgggctccatctgcgtgagcgagaacatcaacaacactctgacgcgctac
cgctggctcgtcagcgcccctaagggcccggacggcgtgacgggccccatgcgcgagctg
gactttgacaccttcttcacctcgtccaagctcgtcacgctggactcggtctacttccaa
gcgggctccagggtgcagtgcgccgccagggccgtcaactcggacggcgacgaggggctg
gagctcagcagccccgtggtgaccatcagcacggacgagggcatgtgccagcctcgcgtg
gccggcacggtgggggccgagcccttctcagccaaactgcgctacaccggcgccgaggac
tccgagcatcccaatctcatcaaactgactgtcaccatgcctcacattgatggtatgctg
cccgtggtgtccacccgcgccctgtccaactttgagctgaccctcagcccggacggcacc
cgcgtgggcaaccaccgctgctccaacctgctggactactcggaagtcaagacgcgccac
ggcttcctcaccgacgccaccaagaacccggaggtgctgggcgagacggcgccgtaccag
tacagcgccgcgctgaggggcgccggcacgctgcgcttctaccgcaacctcaacctggag
gcctgcctgtgggagtttgtcagttattacgacatgtccgagctgctcgaggactgcggc
ggaaccatcggcaccgatggccaggttctgaacctggtccagtcctacgtgacgctgcgg
gtgccgctccacgtgtcctacgtcttccactcgccggtgggggcgggcggttggcagcac
tttgacctgcagtcggagctgaggctgacttttgtgtacgacaccgccatcttgtggagg
gacggcatcggcagccccccggaggccgaactccaaggcgcgctctacccgagcagcatg
cgtattaacgagctgggacgcctggtggtcaacttccgcaccgaagctcgctttcggggc
ctgtttgtcgccaggcatcctgcttccggcctgacctccatagtcataagcgcggaccac
cctggcctgacgttcaacctcagcctggtgcgcagcgagcccacctacaaccaacccatc
cagcagtggaccttcatctcggactttgccgtacgcgactactcgggcacgtacacggtg
aagctgctgccgtgcacgtcgccgcccggcctggagttcaccgtcccgcccgtgtgcaac
cccagggagcccgtgggctttgagctggacatccgatttcagcaggtgagcgatcccgtg
gctgccgagttcagtctgaacacagagatgctgctgctctccaaaaagaccctgtggctc
tccgacggcaccgccggcttcggccagaccagcgacacggctttctcgcaaggcgacacc
atctacggccgcgtcatggttgacccggtccagaacctgggcgactccttcatctgcaac
attgagaaagtattcctatgcactggcgccgacggctacgtgcccaaatacaaccccgac
ggctttgagtttggctgcctggccgacgcaccgtcgctgctctacagattcaaaattatc
gacaaagcccagccagagacccaggccaggacttttggaaacgtgggcttcagcgcccgc
ttggctgtcgacgacccggccgctctccctctggtcagacagccgggatcagatgggttc
agcctggattcatccgccctcttccaggtgtccgccggtcgagagtggttcatccacacc
atctacacggtgcgctcccgggacaacgccaagcggggcatcggcaaacgcagcctggag
taccacacgctgagccggcaccggcggtccgccgacgtcgaggaaatcggtgccgacaat
aaccgcggcaccaacatcctccacatcgcgctgaagcgcggcgctcgccagggcgccgat
ctcgccgggaacgtcccggtccccgacggggtggttccgcgcgggctcacagaggcggag
gacggcggcaccgccaccgatgggccggtgctaatagtgggcgtggcggtcgggatgctg
ctggccgtcctggtgctggtgctgctggtggcgctggtgcgactcaagcgagacgccaag
ggcgcggccgccccgtcgccaagcggccggcaagcgccgggcgacagctccgaggtctga
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integrated database retrieval system
