Syngnathus scovelli (Gulf pipefish): 125972721
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Entry
125972721 CDS
T08785
Symbol
trpc4b
Name
(RefSeq) short transient receptor potential channel 4b isoform X1
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125972721 (trpc4b)
Ion channels [BR:
sscv04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
125972721 (trpc4b)
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GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_3
Ank_4
Ank
Ank_5
PKD_channel
DUF8104
Motif
Other DBs
NCBI-GeneID:
125972721
NCBI-ProteinID:
XP_049582626
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Position
7:848164..854010
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AA seq
887 aa
AA seq
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MSRLYYKKTGSPSYSDRIPLRIVRAEPELSALERAYLGAVGKGDYATVKEALEEAEIYFR
INIDCVDSLGRTALLIAIENENLEIVDLLLSYNVHVGDALLHAIRKQVVGAVELLLNHKK
PSGEKQKLPPILQDKQFWGFTPDITPIILAAHTNNYEIIKLLVQRGVSIPQPHAVLCDCL
ECVSSSDVDGLRHSHCRLNIYKALASPSLIALSSEDPFLTAFQLSWELKELSRVENEFKA
EYEALSRTCKQFAKDLLDQTRSSKELEIILNYRDDINPLLDENTNDLARVKLAIKYCQKE
FVAQPNCQQLLASRWYDQIPGWRRRHWAVKLVTCMLIGLLFPVLSIFYLVSPKSRYGLLI
RKPFIKFICHAASYLTFLFLLFLASQHIEAPQRDIQGPAPTVVEWMILPWVIGKQFLVFF
PAIGHNATTCLCLEGFIWTEIKQMWDSGFQDYMDDWWNIMDFIMNALYLATISLKIVAYA
KYSGHKPRCSWEMWHPTLIAEALFAIANIFSSLRLICLFTANSHLGPLQISLGRMLLDIL
KFLFIYCLVLLAFANGLNQLYYYYGTDVGDNCKGIRCMQQNNAFSTLFETLQSLFWSVFG
LISLYVTRVKPPHEFTEFVGTTMFGTYNIISLVVLLNMLIAMMNNSYQHIADHADIEWKF
ARTKLWMSYFEEGGTLPSPFNIIPSPKSFYYLTGWIRAHLFHVPSIKRLETFESLGRRAA
DNVRLNHEYQEVLKNLIKRYVAAMIRDAKTEKGLTEENFKELKQDISSFRYEVLGMMRGK
WQRGSILASSPFAYPGNSFKYSPKYFTAEESQQRLEVFELSGRGPGPGDGAIAVSPEQTQ
ARRASQNRSAMASKCSDSAEKQQLKSPRVIVQVARELEKDSQEKDLP
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggctgtactacaagaagacgggcagcccctcctacagcgatcgcatccccctg
cgcatcgtgcgggccgagccggagctctcggccctggagcgggcctacctgggggcggtg
ggcaagggcgactacgccacggtgaaggaggccctggaggaggccgagatctacttccgc
atcaatatcgactgcgtggactcgctggggcgcacggcgctgctcatcgccatcgagaac
gagaacctggagatcgtggacctgctgctcagctacaacgtgcacgtgggcgacgccctg
ctgcacgccatccgcaagcaggtggtgggcgccgtggaactgctgctcaaccacaagaag
cccagcggggagaaacagaagctcccgccaatcctgcaggacaagcagttttggggcttc
accccagacatcactcccatcatcctggcggcgcacaccaacaactacgagatcatcaag
ctgctggtgcagcgaggcgtgtccatcccgcagccgcacgccgtgctgtgcgactgcctg
gagtgcgtgtccagctcagacgtggacggcctgcgccactcgcactgccgcctcaacatc
tacaaggcgctggccagcccctcgctcatcgccttgtccagcgaggaccctttcctcacc
gccttccagctcagctgggagctgaaggagctcagcagggtggagaacgagttcaaggcc
gagtacgaggcgctgtcgcgtacctgcaaacaattcgccaaggacctcctggatcagacc
aggagctccaaggagctggaaatcatcctcaactaccgcgacgacatcaacccgctgctg
gatgagaacaccaacgatctggcccgggtcaagttggccatcaagtactgtcagaaggag
tttgtggcccagcccaactgtcagcagctgctggcgtcgcgctggtacgatcagatcccg
gggtggagaagacggcactgggcggtcaaactggtcacctgtatgctcatcgggctcctc
ttcccagtcttgtccatcttttacttggtgtcgccgaagagccgctacggcctgttgatc
cgcaagcccttcatcaagttcatctgtcacgccgcttcctatttgaccttcctgttcctg
ctcttcttggcgtcgcagcacatcgaagccccgcagcgggacattcagggcccggcaccc
accgtggtggaatggatgatcctaccctgggtcatcggtaaacaatttctcgtttttttc
ccggcgattggtcataatgccaccacttgcttgtgtcttgaaggtttcatctggacagag
atcaagcagatgtgggatagcggtttccaagactacatggatgactggtggaacatcatg
gacttcattatgaacgcgttgtaccttgcaaccatttccctcaagattgttgcctatgca
aagtacagcgggcacaaaccccgatgcagctgggaaatgtggcacccgactctgattgcc
gaggcgctcttcgccatcgccaacatcttcagttccctgcgcctcatctgccttttcacc
gccaactcccacctgggcccgctgcagatctcactgggccgcatgctcctcgacatcctc
aagttcctcttcatctactgtctggtgctgctggccttcgccaacggcctcaaccagctc
tactactactacggaaccgatgtgggcgacaactgcaagggaatccgctgcatgcagcag
aacaacgccttctccacgttattcgagacgctgcagtcgttattctggtccgtgtttggc
ctcatttccctctacgtgacacgagtgaagccgccccacgaatttaccgagtttgtcgga
accaccatgttcggcacgtacaacatcatctccctggtggtgctgctgaacatgctcatc
gccatgatgaacaactcgtaccagcacattgcggatcacgcggatatcgagtggaaattt
gcaagaactaaattatggatgagctactttgaagagggaggaacgttgccgtcgccgttc
aacatcatacccagtcccaagtcgttttattatctgacggggtggatacgagcgcatctg
tttcacgtgcccagcataaaaagacttgaaacttttgaaagtttagggaggcgagcggca
gacaatgtgcgactaaaccacgagtatcaggaggttttgaaaaatctcatcaagaggtac
gtggcggcaatgatccgagatgccaagacggagaaaggtttgaccgaagaaaacttcaag
gagctcaagcaggacatctccagcttccgctacgaggtgctgggaatgatgcggggcaaa
tggcaaagaggctccatattggccagctcccctttcgcttacccgggaaactccttcaag
tattcccccaagtacttcacggcggaagagtcgcagcagaggctggaggtgtttgagctg
agcggccgcgggcccggcccgggtgacggcgccatcgccgtcagccccgagcagacgcag
gccaggcgggcttctcagaaccgctccgcgatggcctcaaagtgttccgacagtgccgaa
aagcagcagctgaaaagtcccagggtgatagtgcaagtggcacgggagttggagaaggac
tctcaagagaaagaccttccctga
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