Syngnathus scovelli (Gulf pipefish): 125972741
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Entry
125972741 CDS
T08785
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125972741 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125972741 (prpf8)
Spliceosome [BR:
sscv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
125972741 (prpf8)
Complex C
U5 SnRNP specific factors
125972741 (prpf8)
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Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
125972741
NCBI-ProteinID:
XP_049582661
LinkDB
All DBs
Position
7:11413804..11427490
Genome browser
AA seq
2339 aa
AA seq
DB search
MAVAFPFRGVPAGVPPPGVPLPPQVPDYMTEEKLQEKARKWQQLQAKRYSEKRKFGFVDA
QKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDV
PVLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPL
DYADNILDVEPLEAIQMELDTEEDGPVVEWLYEHQPLKDTTKFVNGTTYRRWQFSLPMMS
TLYRLANQLLTDLVDYNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEF
NDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLI
NPISHRHSVKSQEPLPDDDEEFELPEFVEPFLKETPLYTDNTANGIALLWAPRPFNLRSG
RTRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSF
KSTKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERK
KSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKY
KLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLL
ARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSES
WRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNL
GRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDT
KLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGI
EFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWC
QGINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVV
INYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQD
TATESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPR
DARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRI
LPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTF
TKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVF
YTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWE
SEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGW
RVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFP
TWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLD
LTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHP
RKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDI
ERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSGYGNWFPGSKPLIQQAMAKIMKA
NPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEG
NLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEE
QPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVL
FNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEW
IKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQ
SQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDD
IKETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQT
VHLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITC
SFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQ
VSWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYG
NT seq
7020 nt
NT seq
+upstream
nt +downstream
nt
atggcagttgcattcccctttcgcggggtacctgccggggtcccgcctccgggtgtcccc
cttccaccacaagtcccagactacatgactgaagagaaactccaagagaaagcgaggaaa
tggcagcagttgcaggcaaagcgctactctgagaagagaaagtttggttttgtggatgct
cagaaggaagacatgcctcctgaacatgtccggaagatcatcagggatcatggtgatatg
accaatcggaagtttcggcatgacaaaagggtctacttaggtgccctcaagtacatgcct
catgcagtgctgaaactgctggagaacatgccgatgccttgggaacagatcagagatgta
cccgtactgtaccacattactggagccatttcatttgtgaatgaaataccttgggtcatc
gagccagtctatattgcccagtggggcacaatgtggatcatgatgcgccgagagaagcgt
gaccgacgacatttcaagaggatgcgttttccaccatttgatgatgaggagccgccgctg
gattacgcagacaacatacttgatgtcgaaccgctggaggccattcaaatggagctggac
acagaggaggatggtcctgtcgtggaatggttatatgagcatcagcccctcaaagacaca
acaaagtttgtgaatggcaccacttaccgtcggtggcagttctcactccccatgatgtcc
acactctaccgcctggccaaccaactgctgacagacttggttgattacaactacttttac
ctgtttgatctcaaggccttcttcacatccaaggctttaaacatggctatacctggagga
ccaaaatttgagcctcttgttcgagacattaacctccaggatgaagactggaatgagttc
aatgacatcaacaagatcatcatcagacagcctatcaggacagagtacaaaatcgccttc
ccctacctgtacaacaacttaccgcaccatgtccacctcacctggtaccacacaccaaat
gtggtgttcatcaagacagaggacccagatctgcctgcgttttactttgatccattgatc
aaccccatttcacacaggcattcagtcaagagccaagagcctcttcccgacgatgacgag
gagttcgagcttccagagtttgtggagcccttcctcaaggagacacctctgtacactgac
aacacagccaatggcattgctctgctgtgggcgccaagacctttcaacttgcgttcaggg
cgcaccaggagagccatagatatccctctcatcaagaattggtatcgtgagcattgccct
gcaggacaaccagtaaaagttcgtgtgtcataccagaaactgctgaagtactatgtgctc
aatgctcttaaacacagaccccccaaggcccagaaaaagaggtaccttttccgttccttc
aagtccacaaagttctttcagtccaccaagctcgactgggtggaggtgggcctgcaggtg
tgccggcagggttacaacatgctcaatctgcttatccaccgaaagaatctcaactaccta
catttggactacaacttcaacttgaagcctgtcaagacactgaccacaaaggagcgtaaa
aagtcaagatttggcaacgctttccatctctgtcgagaggtgttgcgactcagcaagctg
gtggtggacagtcatgttcagtacagactgggaaatgtggatgctttccagttgtctgat
ggactgcagtacatctttgctcatgtaggccagctaactggcatgtaccggtacaagtac
aagctgatgagacaaatccggatgtgcaaagatctgaaacatctcatctactaccgcttt
aatacgggtcctgttggcaagggaccaggttgtggcttctgggcacctggatggagggtg
tggcttttcttcatgaggggcataactccactgttggagaggtggcttggaaatttgctg
gccaggcaatttgaaggacgtcactccaagggtgtggccaagactgtgaccaaacagcgt
gtggagtcccactttgacctggaattgcgtgctgctgtgatgcacgacatcttggacatg
atgcctgagggcatcaaacagaacaaagcccggacaatcctgcagcatctcagtgagtct
tggaggtgctggaaggccaacatcccatggaaggtacctggtttgccaacacccattgaa
aacatgatcctgcggtatgtgaaggccaaagctgactggtggactaacacagcccactat
aaccgtgagcgaatccgccgcggggccactgtagacaagacggtctgcaaaaaaaacctg
ggaagattgacccgtttgtacctgaaagctgagcaggagagacagcacaattacttgaag
gatggtccctacatcacagctgaggaagctgttgccatttataccacaactgttcactgg
ctggaaagtcgacgtttctcgcccatccctttccctccactgtcatacaagcatgacacc
aagctgctaatcctggctctggaaaggcttaaagaggcttacagtgtgaaatctcgcttg
aaccagtctcagagggaagagcttgggctgatcgagcaagcttatgacaaccctcacgag
gctttgtccaggatcaagcgtcacctgctcacacagcgagctttcaaagaggtgggtatt
gaatttatggacctgtacagccacctggtgccagtgtatgatgtggaacccctggagaag
atcacagacgcctaccttgatcaatatctgtggtatgaagcagacaagaggcgactcttc
ccaccctggatcaaaccagctgacaccgagccacctccactgctcgtctataagtggtgc
caaggcatcaacaacttgcaggatgtttgggaaactgcagaaggagagtgcaatgtaatg
ctagagtcacgctatgagaagatgtatgagaagatcgatttgacgttgctcaacaggctg
ctacgtcttattgttgaccacaacattgctgattatatgacagccaagaacaacgttgtc
atcaactacaaggacatgaaccacacaaactcttatggcatcatccgtggcctccagttt
gcatcgttcattgtacagtactacggcttggtaatggatctcctggtactgggtttgcac
cgtgccagcgagatggcaggtccaccccaaatgcccaacgatttcctcagtttccaagat
acggcaacagagagtgcccacccaatcagactgtactgccgctacattgaccgcattcac
atcttcttcaggttttctgctgatgaggcgagggacctcattcagaggtacttgacagag
caccctgaccccaacaatgaaaacattgtgggctacaacaacaaaaagtgctggccacgt
gatgcccgcatgaggctgatgaagcatgatgtcaatcttggccgtgccgtcttttgggac
atcaagaaccgtctgccaaggtctgtgaccacagtccagtgggagaacagctttgtgtca
gtctacagcaaagacaaccccaacctgcttttcaacatgtgtggctttgagtgccgcatt
ttgccgaaatgtcgaacgagctatgaggagttcacccacaaggatggtgtctggaatctg
cagaatgaggttaccaaggagaggacagctcagtgtttccttcgtgtggacgatgaatca
atgcagcgcttccacaacagagtgcgccagattctgatggcttcaggctcaactactttt
acaaagattgtaaacaaatggaacacagctcttattggcctgatgacctacttccgcgaa
gcagtagtcaacactcaggagctgctcgacctgctggtcaagtgtgagaacaagattcaa
actcgtatcaagatcgggctgaactctaaaatgcctagccgtttcccgcctgttgttttc
tacactcccaaagagttgggtggcctgggcatgttgtccatgggccacgtgctcatacca
cagtctgatctgcgttggtccaagcagacagacgtgggaatcacccacttcaggtctgga
atgagtcatgaagaggaccaactcattccaaatttgtaccgttacattcagccatgggag
agtgagttcattgactcccagagagtgtgggcagaatatgctctcaagaggcaagaggcc
attgcacagaacaggcgactgaccttggaggatttagaggactcgtgggacagaggaatc
ccacgtatcaacacccttttccaaaaggacagacacacactggcctatgacaaaggctgg
agagtccggacagattttaaacaataccaggtgttaaagcaaaatccgttttggtggacc
caccagaggcatgatggtaaactgtggaacctcaacaactaccgcacagacatgatccag
gccttgggtggtgtggagggcatcctggagcacacacttttcaaaggcacttacttcccc
acctgggagggtctcttctgggagaaggccagtggatttgaggaatccatgaagtggaag
aagctgacaaatgctcagaggtctggtctgaatcaaattcccaaccgtcgcttcactctc
tggtggtcccccacaatcaacagagccaatgtatatgtgggtttccaggtgcagcttgat
ctgactggaatcttcatgcatggaaagattcctaccctgaagatctccctcattcagatc
ttcagagctcacttgtggcagaagatccacgagagcattgtcatggatctctgtcaggtg
tttgaccaggagctcgatgctctcgagatcgagactgtgcagaaggagaccatccacccc
aggaagtcgtacaagatgaactcatcctgtgccgacattctcctttttgcgtcctacaag
tggaacgtctctcggccatctctgcttgcagactcaaaggatgtgatggacagcaccacc
acacagaagtactggattgacattcagctgcgttggggtgactatgactcgcatgacatt
gagcgctacgccagggccaagtttttggactacaccacggacaacatgagtatctaccct
tcccccactggagtgcttattgctatcgacttggcgtacaacctccacagtggctatgga
aactggttcccgggcagcaagcctttgatccaacaggccatggccaagattatgaaggcc
aaccctgccctgtatgtgctcagggagcgcatccgcaagggtcttcagctctactcctca
gagcccactgaaccatacttgtcctcacagaactacggggagctcttctctaaccaaatc
atttggtttgtggatgacaccaacgtctacagagtcaccatccataagacctttgagggc
aacttgaccaccaaacccatcaatggagccattttcatcttcaaccccaggactggtcag
cttttcctaaagattattcacacgtctgtgtgggccggacagaaacgtctgggccagctt
gccaaatggaagacggcagaagaagttgctgccttgatccgctccctcccagtggaggag
caacctaagcagatcattgtgaccaggaagggtatgctggatcctctggaggtccacttg
cttgacttccccaacattgtcatcaagggctctgagttgcagctgcccttccaggcctgt
ctgaaggtggagaagtttggagacctcatcctcaaagctaccgagcctcagatggtgctg
ttcaacctttatgatgactggcttaagaccatttcctcttacacagccttctctcgactc
atcctgatcctcagagcgctccacgtcaacaatgaccgcgccaaggtgatcctgaaacct
gataagaccaccatcaccgagcctcatcatatttggcccactctcacggatgaagaatgg
atcaaggtggaagtgcaacttaaagacctcattctggctgactatggcaaaaagaacaat
gtaaacgtggcatcactgacccaatctgagatccgtgacatcatcctggggatggagatc
tctgctccctcgcagcaacggcagcagatcgccgagattgagaagcagaccaaagagcaa
tcgcaactcaccgccacacagacacgcaccgtcaacaaacacggtgacgagatcatcact
tccaccacatccaactatgagacgcagaccttctcctccaagacagaatggagggtcaga
gctatatctgctgccaacctccatctccgcaccaaccacatttacgtgtcctctgatgac
atcaaggaaacaggatacacctacatcctgcccaagaatgttctcaagaagttcatctgc
atttcagatttgcgtgcacagattgcaggctacctgtacggcaccagcccgcctgacaac
ccccaggtaaaggagatccgttgtatcgtcatggttcctcaatggggcacccatcagact
gtgcatctgcccaaccagctgccaggacacgaatacctgaaagaaatggaaccccttggt
tggatccacacacagcctaacgagtcaccacagctgtccccccaggatgtcacgacccac
gcaaaggtcatggctgacaatccctcttgggatggagaaaagaccatcatcatcacatgc
agcttcacgccaggctcatgcacactgacggcctataagctgacacccagcggctacgag
tggggcagacagaacacagacaagggcaacaacccgaaaggttaccttccgtcgcactat
gagagagtccaaatgctgctctctgaccgcttcctgggcttcttcatggtaccgggccaa
gtttcctggaactacaatttcatgggtgtacgtcacgaccctaacatgaagtacgacttg
cagctggccaaccccaaggagttctaccacgaagtccatcgaccatcgcacttcctaaac
tttgcctcgttacaggagggtgaaatctacaatgctgatcgtgaggatatgtatggttga
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integrated database retrieval system
