Syngnathus scovelli (Gulf pipefish): 125972742
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Entry
125972742 CDS
T08785
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
125972742 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125972742 (scarf1)
Membrane trafficking [BR:
sscv04131
]
Endocytosis
Phagocytosis
Scavenger receptors
125972742 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_2
EGF_PEAR1L
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
125972742
NCBI-ProteinID:
XP_049582663
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All DBs
Position
7:11435816..11441409
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AA seq
911 aa
AA seq
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MKVLLRTLTTLCCCWLSYSLMLDSAGRNVCHNPRDPATHVCCTGWRQNGKECTIPVCEGD
QACLKNELCVYPGVCRCPPGYYGAHCKTRCPPEFWASDCRQVCPCHPHGRCHPITGECTC
NQNRWGPLCQYACKCAHHGVCHPVYGNCTCDEGWWTATCTKPCQCVPGGSMGPGCDQLTG
RCQCHKGHWGLKCPVPCNCYLSQCNQRTGLCECEAGWWGPNCDRRCNCDLTHSSCDPATG
QCLCYPGYEGNDCNQPCKPGMYGIGCQMSCGHCKGDEVCASTDGACASCETGWNGTQCDR
LCTPGSYGNSCQETCPRCRNNERCDPRSGNCWSCNAGWTGPRCEEVCSDRTYGEACRFLC
SPCYHGDCHHVTGKCICHSGFQGESCNSSCSGAQFGLNCSLACECGEGVSCHPVTGACPN
SGRGALLVGLLLPLLLLILAIFCCCLCCGGAPADSKDRMTVADGGLAVRMKYHVYSVLAN
IGAALPCISDWSSGLPRVTVSHHDPELTFNHSFIEPPSSGWVTEGSSFDSDEEEGEALYC
VPPREDISGMEGSHFQEMSSKCNMLLDPSGFSSEDITSPFDIPRTSSIAKTKRPSVSFAE
GTRFSPKERRGSAQDVTSLSGHPRKAKSTCGGLVFSIGPGEEDEADAEEREDGVEVQVTD
HQDLSYEVVDQEEDRKSSNTFRTTSGRRRTTSNTAPQHKVSTTSATDHPPGVPNKVTTVY
VTVGKTGRSTSKLEPSSQGPVQAMLRRLGSLQRQREQEPGKSKPKDSEAIAKPPRRKLGA
RRSVWEQGGPPGVEPAISKPVRRKHASQNTPQTASCDTGSSESIPLKRPLSSILKSVPEV
ASPDFQDSGRSNEHEPSGGQTESSYFTVGPAGDAATLIEVRTGEGEVERVKEEPCYENVM
ITHSYTSNTNA
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgaaggttctcctcagaactttgacgactttatgctgctgttggctgtcttactcactt
atgctggactcggccgggaggaacgtctgccataaccccagggatccagccacacatgtg
tgctgcacaggctggcgtcagaatggaaaagagtgcacaatacctgtgtgtgagggtgat
caggcctgtctgaagaatgagctctgtgtctatcctggagtttgtcgctgcccaccaggc
tactatggagctcactgtaaaacacggtgtcctccagagttttgggcatcagactgccgt
caagtgtgcccgtgtcacccgcatggccgctgtcaccccatcacaggtgagtgcacctgc
aaccaaaaccgctggggtcctctgtgccaatacgcctgcaaatgcgcccaccacggagtc
tgccaccccgtatacggaaactgcacctgcgacgagggctggtggacagccacttgcacc
aaaccgtgccagtgtgtccccgggggttccatgggacccggctgtgaccaactgacgggc
cgctgtcagtgccacaaggggcactggggactgaaatgtcctgtcccttgcaactgctac
ttgtcacagtgcaaccagcgcaccggtttgtgtgagtgcgaggccggttggtgggggccc
aactgtgaccggcgttgcaattgtgacctcacacacagtagttgtgaccctgccaccggg
cagtgcttgtgctatccggggtacgaaggcaacgactgcaaccagccgtgtaaacctggg
atgtatggcattgggtgtcaaatgagttgtggacactgtaaaggagatgaagtgtgcgcc
tccactgacggcgcatgtgcatcttgtgagacgggctggaatgggacacagtgcgaccgc
ctttgcacacctggttcctacggtaacagctgccaggagacgtgcccgcggtgcagaaac
aacgagcgctgcgatccccgaagtggtaattgttggagctgtaatgcgggatggacagga
cccaggtgcgaggaggtctgctccgacaggacgtatggagaggcttgccgcttcctgtgc
agcccgtgttaccatggagactgtcatcacgtgacaggaaaatgcatctgtcattcgggc
tttcagggggagagttgtaacagcagttgctcaggtgcacagttcgggctcaactgttcc
ttggcctgtgagtgtggcgaaggggtcagctgtcacccggtcactggtgcctgccccaac
agtggccgaggcgctctcttggttggcctactacttccattgctgttgttaatcctcgct
atattctgctgttgtctatgttgtggaggagctccggcagacagcaaagacaggatgaca
gtggcagatggagggctggctgtgcggatgaaatatcacgtctacagcgtcttggctaac
attggtgccgccctaccctgcatctctgactggtcctctggcctccctcgtgtcactgtg
tctcaccatgacccagagctgacgttcaaccacagcttcattgagcctccttcctcgggt
tgggtgactgaagggtcatccttcgacagtgatgaggaggagggggaggctctttactgc
gtccccccgagagaagatatctcaggaatggagggtagccacttccaggagatgagctcc
aagtgtaacatgctcttggacccgtcaggcttcagtagcgaggacattacctcccccttc
gacatcccccgaacttccagcattgccaaaaccaagcggccgtctgtttcttttgcagag
ggcacccgcttcagccccaaggagagacgtggctcggctcaagatgtcacctctctgtcc
gggcacccacgcaaagccaaatccacctgcgggggtttagtgttctcaattgggccgggc
gaagaagatgaagctgatgctgaggagagggaagatggcgtagaagttcaggtaacagat
caccaagatttgagctatgaggttgtggaccaggaggaggatagaaagtcgagcaacaca
ttccggaccacatcaggacgaagacgtaccacgtccaacacagctccacaacataaagtg
tcgaccacgtccgctaccgatcatccacccggtgttccaaacaaggtcaccacagtgtat
gtgacggtagggaagacagggcggtccacgtccaagctggagccgagctcccaaggccct
gttcaggccatgttaaggcgtcttggaagcctccagagacaaagagagcaggagcctggc
aaaagtaaacccaaagactcagaagccatcgccaaaccccccaggagaaaactcggggct
cggagaagtgtgtgggagcagggcgggcctccaggagtcgaacccgccataagtaaaccc
gtgaggaggaaacatgcttcacaaaacactcctcaaacggcttcttgcgatacagggtcg
tcggagagcattcctctcaaaaggccgctgtcgtctattttgaagagcgttccagaggtg
gcgtcgcctgactttcaagactcaggcagaagtaacgaacatgagcccagtggaggacaa
actgaaagcagttacttcactgttgggccagcaggggacgctgctactcttattgaagtc
aggaccggtgaaggtgaagtggagcgtgtgaaagaggagccatgctatgaaaacgtcatg
atcacacactcgtatacctcaaacacaaatgcataa
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