Syngnathus scovelli (Gulf pipefish): 125972767
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Entry
125972767 CDS
T08785
Symbol
trip12
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125972767 (trip12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sscv04121
]
125972767 (trip12)
Enzymes [BR:
sscv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
125972767 (trip12)
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
HECT type E3
125972767 (trip12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
M-HEAT_ATR
Motif
Other DBs
NCBI-GeneID:
125972767
NCBI-ProteinID:
XP_049582697
LinkDB
All DBs
Position
7:complement(6615659..6633989)
Genome browser
AA seq
2055 aa
AA seq
DB search
MSNRPNSNPGGSLRRSQRNTAAAQPQDHTVAGRLQSEQVKQKVNSPPESRRPISKASKAT
SSSVTGQTRGHSSKRSGLALSVASFVLQDDPEAAGTSEQERQSHQSKSEGTQGLKRSEAP
DQISTLGPPLTKKAKSQPLPRDNTSETRKNTAKKRSLAAEAPASSGRGQSKKSGATGASP
VQKRKKADSHPGLRSTTVSLSNSTEGRTVKPTKLASKSAASAKAGCSNVTDSSSSASTSS
SSSTTGTNSATTPGARVKQGKDQTKARRSRSASSPSPRRSTRDKEQAKSSSSKFEWATRF
NPKVNLPKPKLSLTASSKTETSKPGPSGLQAKLARLRESTKKRSESPPAELPSFRRSTRQ
KTTGSCASTSRRGSGLGKRGAADARRQEKMADSDNNQDGANSSAARTDEASQGASASSSV
TGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIGSGASSKAQ
QLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHNFDIMN
HASRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVAEQALTALEMLSRRHSKAILQ
AGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVADSLPLLTQRLAHQDKKSV
ESTCLCFARLVDNFQHEENLLQEVASRDLLTNIQQLLVVTPPILSSGMFIMVVRMFSLMC
SNCPCLAVQLMKQNIAETLRFLLCGASNGSCQEQIELVPRSPQELYELTSLICELMPCLP
REGIFAVDLMLKKGSAQTTEGVIWQWRDDRGLWHPYNRIDSRIIETAHQNGEDEISLSTL
GRVYTIDFNSMQQINEDTGTARGIQRKPNPLANPNSGSHQEVRREDARAQLMKEDPELAK
CFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFADAELLKDVLRNHAVSSHIASMLS
SQDLKIVVGSLQMAEILMQKLPDVFSVYFRREGVMHQVKNLAESESFLVTCPPKASPSSS
TSLCTTTISTTSTTAANNTTPDLGSPSFQHSMDDSLDLSPQGRLSDVLKRKRLPKRGPRR
PKYSPPRDDDKVDNQAKSPTSTQSPKSSFLASLNPKTWGKLGAQTNNANSEPSRTAGVSG
LARAPPKDSVSNNRDKIKAWIKEQANKFVERYFNSENVDGSNPALNVLQRLCTSTEQLNL
QVDGGLECLSEISSIVSESDVSSFEIQHSGLVKQLLLYLTSHTDRDLLSRDLRLKRFLHV
FIGCPAPGTEPESSLDPTENGPFLALVHKMNSCLSQMEQFPVKVHDFPSGNGNGSRGSQA
LKFFNTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGYGRIREEDEDS
DDDGSDDEIDESLAAQFLNSGSVRHRLQFYIGDHLLPYNMTVYQAVRQYSLQAEEEREST
DDEANPLGRAGIWTKTHTIWYKPVREDEDGSKDAVGGKRGRAQTAPTKTSPRNAKKQDEL
WHDGVCPSVINPLETYLISEPPESITFDDPSLDVNLLLRVLHSISRYWFYLYDNAVCKEI
IATSEFINSKLTAKANRQLQDPLVIMTGNIPTWLIELGKTCPFFFPFDTRQMLFYVTAFD
RDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTINRDELLKQAESVMQDLGSSRAMLE
IQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLTNPKGSQEGMKYMFSTRGLF
AVPFGRTTKPAHIAKIKMKFRFLGKLMAKAIMDFRLLDLPLGLPFYKWMLRHETSINSHD
LVNIDPDVAKSILHLEDIIRQKKRLEQDRSQTRETLQQALESLNMNGCIVEDLGLDFTLP
GFPNIELKKGGKDVSVTIYNLEEYLRLVVYWTLNEGVSRQFESFREGFESVFPLHHLQYF
YPEELDQLLCGSKSETWDVKTLMECCRPDHGYTHDSRAVRFLFEVLSSFDAEQQRLFLQF
VTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDEFLPSVMTCVNYLKLPDYSSIEIMREK
LLTAAREGQQSFHLS
NT seq
6168 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaattccaatccaggggggtcactgcgccgttcacagaggaacact
gctgcggcccagccacaagaccacactgtcgcaggaaggttgcagtcagagcaggtcaaa
caaaaagtaaattccccacctgaaagtagacggcccatatccaaggcttccaaagccaca
agcagctcagtcactggccaaaccagaggccacagctcaaaaagaagcggacttgcgctg
tccgtggcatcttttgtactgcaagacgacccagaagctgcagggacatccgaacaagag
cgacaaagccatcagtccaagagcgaaggcacccaaggactcaagcgaagtgaagctcca
gaccaaattagcacgttaggaccgccactaacaaaaaaggccaaatcccagcccttaccc
agagataatacctcagagaccaggaaaaacacagctaagaagaggtcactagctgcagaa
gcacctgcatcctcgggtagaggacagagtaagaaaagtggggccactggggcctcaccg
gtccagaaacggaagaaagcggattctcatccaggtctaagaagcaccaccgtgtccctc
tccaatagtacagagggcagaactgttaaacccaccaagctggcgtcaaaatcggccgcc
tcagccaaagctgggtgcagcaacgtgacagactcctcctcttctgcctcaacttcctcc
tcctcttccactacaggcacaaatagtgccacaacgccaggtgcccgagtcaaacagggc
aaagaccagacaaaggctcgccgatctcgctccgcctcaagcccctctcctcgccgtagc
acccgtgacaaggaacaggccaagtccagctcttcaaagtttgagtgggcaacacgcttc
aacccaaaagtcaatctgccaaaacccaaactgtctctaactgcatcgtccaaaactgag
acatccaaaccaggaccgtctggattacaagcgaaacttgcacgtttgagagaatccact
aaaaagcgcagcgagtctcctccagcagagctccccagctttcggcggagcacacgtcag
aagaccacgggctcctgtgccagcaccagtcggcggggctcaggcctgggcaagcgtggg
gcagctgacgctcgccggcaggagaaaatggctgactccgacaacaaccaggatggggca
aactcgtcggccgctcgcactgatgaggcatcacagggcgcctcagcttcgagttcagtt
actggagcagtaggcatgaccacctctggagagagtgaatctgatgactcggaaatggga
aggcttcaagctttactagaggccaggggtctccccccacatctatttggccccctggga
cctcggatgtcacagctctttcacaggaccatcggcagtggtgccagctccaaggctcag
cagttactgcaaggtctgcaggccacaggtgatgagtctcagcagctccaagctgccatt
gagatgtgccagctgttggtaatgggcaatgaagagacacttggtggatttcctgtcaaa
agcgttgtgcccgctttgattacacttttgcaaatggagcataacttcgatattatgaat
catgcctcccgtgcactcacatacatgatggaggccctccccaggtcctcagctgtagtg
gttgatgctattcctgtcttcctggagaagcttcaggtgatccagttcattgacgtagct
gagcaggccctgactgccttggaaatgctgtcgaggcgacacagcaaagcaattttgcag
gcaggtgggcttgctgactgcctactctacctagaattcttcagcatcaatgcacagagg
aatgccttggccatagcagccaactgctgccagagcattacacctgatgagttccacttt
gttgctgattctctgcctctgttgactcagagacttgcacatcaggacaaaaagtctgtt
gagagcacttgcctctgtttcgctcgactggtggataattttcaacacgaggagaacttg
ctgcaagaagtggcatcacgagaccttttgaccaacattcagcagctgctagtagtgaca
ccacctatacttagctctgggatgttcatcatggttgtgcgcatgttttccctcatgtgt
tccaactgtccctgcttggcagttcagctcatgaaacaaaacatagcagaaacgttgcgc
ttcctcttgtgtggggcatcaaatggcagctgccaggaacagattgaacttgtaccacgc
agccctcaagagctctacgaattgacctccttaatatgtgagctgatgccctgccttcct
cgagagggcatctttgcagtcgatttaatgctgaagaagggcagcgcccaaacgacggaa
ggagtcatatggcagtggcgggatgatagagggctgtggcacccttacaatcgcatcgac
agccgcattattgagacagcccaccagaatggggaagatgagatcagcttgtcaactctg
ggtcgtgtgtacacaattgactttaactctatgcagcagatcaatgaagacaccggaacg
gctcgtggtatccagaggaagccaaatccacttgcaaatcccaactccgggagccaccag
gaagttaggcgagaagatgcacgagcccagctgatgaaagaagatcccgagctggctaaa
tgttttatcaaaactctatttggggtcttgtatgaagtgtacagctcctctgctggacct
gcagttagacacaagtgccttagagccatcctcaggatcatctactttgctgatgcagag
ctgctgaaggatgtgttgaggaaccatgcagtgtccagtcacattgcctctatgctatca
agccaggacctgaagattgttgtggggtctctgcagatggctgagatcctcatgcagaag
ctccctgatgtcttcagtgtctatttcaggagagaaggtgtaatgcatcaggttaaaaac
ttggcagagtctgagagctttctagttacttgcccgcccaaggcttcccccagcagtagt
accagtctgtgtactacaaccattagcactacatccaccacggccgccaataatacgacg
cctgacttgggttctccgagcttccagcacagcatggatgactcactggacctcagtccg
caagggaggttaagtgatgtcctgaagagaaaacgattacccaagagggggcccagaagg
cctaaatactcgccaccaagggatgatgataaagtagacaatcaggctaagagccccaca
agtacccagtcgcccaaatcatccttcttggccagtctcaatcccaagacctggggcaaa
ctgggtgcccaaaccaataatgccaactccgagccctcacgtacagctggggtgagtggc
ctggcaagggcaccgcccaaggactctgtctcaaataacagagataaaatcaaggcctgg
atcaaagaacaggccaacaagtttgtagagcggtacttcaactctgaaaatgtagatggc
agcaaccctgcattgaatgtacttcagaggctttgcacatccaccgagcagctcaacctg
caggtggatggcggtttggagtgtctttcggagatctccagtatcgtgtctgaatccgat
gtgtcctcttttgagatccaacacagtgggttggtaaagcagctcctgctttatctaacc
tcccacacagacagagacttgctcagtcgagacttgcgactcaaacggttcctccatgtc
tttatcggctgcccggctccaggaacagagcctgaaagttctctggacccaaccgaaaat
gggccttttctggctctggttcacaaaatgaacagctgtctgagtcaaatggagcagttc
cctgtcaaagtgcacgatttccccagtggcaatggcaatggaagcagaggctcacaggca
cttaaattcttcaacacacatcagctcaagtgtcagttgcagaggcatccagactgcact
aatgttaaacagtggaaaggaggtccagtgaagatagaccctctggccctggtgcaagcc
attgagagataccttgtggtcagagggtacggccgaatcagagaagaggatgaagatagt
gatgacgatggttcggatgatgaaatagacgagtcactggctgcacagttcctgaattca
ggcagcgtacgtcatagactgcagttctacattggtgaccacttgctgccatacaacatg
acagtttaccaggctgtgcgacagtacagccttcaggccgaagaagaaagggagtccaca
gacgatgaagcaaacccactggggcgagcaggcatttggaccaaaacgcatacaatatgg
tataagcccgttcgagaggatgaggacggcagcaaagacgctgtgggagggaagaggggc
agagcccaaactgcacccacaaaaacctctccccgcaatgccaagaagcaggatgagctg
tggcatgatggtgtgtgtcccagcgtcatcaatcccttagagacatacctcatttcagag
cctccagagagcatcacctttgatgacccctcgttagacgtcaacctgctgctgagggtt
ctgcactcaatcagtagatactggttctacttgtatgataatgccgtgtgtaaggaaatc
atcgccaccagtgagttcattaacagtaagctgactgccaaagccaaccgtcagctccaa
gacccccttgttattatgaccgggaacatcccaacttggctcatagagctcggaaagact
tgccctttcttcttcccatttgatacacggcagatgttgttctacgtaacagcttttgat
cgcgacagagccatgcagcgcttactggacactaatcctgagataaaccaatcagattct
caggacagcagagttgcaccacgtcttgacaggaaaaagaggacgataaatcgagatgag
ctgctcaagcaggcggagtctgtaatgcaggacctgggaagttcacgtgcaatgttggaa
attcagtatgagaatgaggtgggcacgggtcttgggcccactctggagttctacgctcta
gtttcacaagaactacagcgggctgacctcggtttgtggaggggtgaagaggtcactctg
accaacccgaaaggaagccaagaaggaatgaagtacatgttcagtaccagagggctcttt
gcggttccgtttggcaggacaaccaaaccagcacacatagccaaaatcaaaatgaagttt
cgctttttgggaaagctcatggccaaagccatcatggacttcagacttctggacctgcca
ttggggctgccattttataagtggatgctgcgacatgagacatctataaactcccatgac
ctggtcaacattgatcctgatgttgcgaaatccatcctgcacttggaggatattattcgt
caaaagaagaggcttgagcaggatcgctctcagacaagggagacgttacaacaggcattg
gagagcctcaatatgaatggctgcattgtggaggacctgggtttggacttcacactccca
gggttccccaacattgagctgaaaaagggtgggaaagatgtgtctgtcaccatctacaac
cttgaggagtatctcaggttggtggtgtactggactctcaatgaaggtgtgtcaagacag
tttgagtcttttagggaaggctttgagtcagtcttcccactacatcacctccagtatttc
tatccagaagagcttgaccagttgctgtgcggcagtaaatcggagacgtgggacgtcaag
accctgatggagtgctgtcggccggatcacggctacacacatgacagccgggcagtgcgg
ttcctgtttgaagtgttgagcagcttcgacgcagagcaacagagactttttctgcagttt
gtcacgggaagcccaagactgcccgttggaggtttccgtagcctgaacccccctttgacg
attgtgaggaagacattcgagtccactgagaacccagatgagttcctcccttcagtcatg
acctgcgtcaactacctgaagctgcctgactactccagcattgagatcatgcgagagaaa
ctgttgacggcagctcgcgagggccaacagtcgttccacctttcatga
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integrated database retrieval system
