KEGG   Syngnathus scovelli (Gulf pipefish): 125972779
Entry
125972779         CDS       T08785                                 
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
  KO
K06237  collagen type IV alpha
Organism
sscv  Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04382  Cornified envelope formation
sscv04510  Focal adhesion
sscv04512  ECM-receptor interaction
sscv04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sscv00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    125972779 (col4a4)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    125972779 (col4a4)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    125972779 (col4a4)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    125972779 (col4a4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sscv04147]
    125972779 (col4a4)
   00536 Glycosaminoglycan binding proteins [BR:sscv00536]
    125972779 (col4a4)
Exosome [BR:sscv04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   125972779 (col4a4)
Glycosaminoglycan binding proteins [BR:sscv00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   125972779 (col4a4)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 125972779
NCBI-ProteinID: XP_068507462
LinkDB
Position
7:116945..134248
AA seq 1704 aa
MRLRCFLMLLTSTTVLGGDDTELCAGRDCSACRCFPAKGARGSPGSLGRQGSQGPPGFPG
PQGPPGEKGKRGTEGPAGRQGPKGDAGAVGVPGFPGLEGVPGHPGPAGGPGFPGVDGCNG
TRGRPGKLGQPGEQGPRGDVGFQGAKGFPGEPALFFLQYPGVPGDAGLGGLPGLPGGPGP
RGSRGLAGPVGPDGFNGIPGLPGSRGPPGERGRSVPGPQGDEGEQGLQGPPGPFEYVDPP
EDFYIKGEQGPAGPKGRCGAQGLPGLDALPGVKGEKGIVGLPGPRGLPGRLGLPGYKGAK
GAVGSSGLPGLIGQEGPKGMMGDPGFKGLPQEIAITLPGDAGDPGTPGPTGPPGDRGFMG
AHGPRGSPGPSIPGLAGVPGARGTPGSRGDKGDPGQVFTGPEEFPGETGIPGRAGPRGAK
GQPGRPGYYCLPGVPGEPGELGEQGPSGAPGDHGFKGRQGECSCGPPIVVRGPPGPAGKP
GLVGYPGSPGAQGPRGENGCAGDTGVSGQPGLGGLPGIKGFKGQKGDFIVVEIKGKLTGF
DCQFEIDCYKVSLEEEDRVDSQDSLESLDLRSLALTICFQGESYSASPGDQGLPGLPGPK
GLTGQTGPQGSGIVGAIGKRGDPGAPGFPGFSGFPGLKGVQGETLPCIPRNPGPRGQKGA
AGETGPRGLPGPRGFNGFTGPDGPKGDKGQSGLAGPPGRAGPRGFVGDTGVEGLEGFSFS
GEPALVYVFLYVCVCVCVCVCVCVRVRVCVCVCVCVRVRACVHVLVCVSEPGSPGAPGTP
GLRGQAGDSYVGTSGPIGFPGLAGSPGPKGVPGQPGNQGFQGVPGLPGVPGPKGQRGQDG
APGSMGPPGPIADLCKRGKPGPAGLSGPQGASGPQGCFGEKGDVGEPGSPGNGPPGPVGK
PGSPGFPGYPGLPGAPGSSGDSGFAGWDGRKGLMGPLGKNGVPGVRGLIGFPGYPGRPGE
RGRCGQDGRPGCQGPKGEKGRKGYPGPPGKTLGVPIKGARGKPGPPGVNGFPGARGNKGA
QGLVGKPGYPGFNMPSGISGPPGPPGNTGKPGISGRPGHPGPSGFLGLPGETGDTGDPGS
PGRPGEHGRQGRLGSKGDQGESRSRPGLPGDKGPSGDAGPQGASGPQGEPGALGFIGEPG
QRGSKGDLGQPGEQGPPGVIGPPGPRGRPGVPGLPGNTGADGPTGPQGIFGLQGPPGPLG
RHGLDGLKGVKGDIGTRGLGIPGSQGSQGLPGDKGPSGPPGLPGSSQPGPPGPKGPSGAR
GPQGQVGPLGESGPACKNPPSGISGDPGDPGPDGESGFPGDMGDSGPNPPVPGDDGDSGD
NGCPGPKGDKGLPGPRGQAGTCGNQGLKGERGSPGLMGIPGNPGSRGSPGPTGPLGSQGC
TGQAGPKGEMGRVFPCSTYPSPPQGPPGPPGLPGLLGNIGFQGDDGFEGLRGKKGDAGCV
GPRGPLGPPGPVGEPGRRGLEGERGAVGAKGDPGLTGDRGHPGPSRHVNAGFLMVIHSQS
KMPPSCPRGMQTLWLGYSLLYLEGQEKAHTQDLGQAGSCMRVFSTMPFASCNMGTCSYAG
RNDKSYWLSATAAVPAVPVGGASIQEHISRCAVCEAPSAPVALHSQSPVGPPCPSDWASL
WTGFSFLMHTGAGDEGGGQSLTSSGSCLRDFRPQPFVECQGPRGTCHYFANIYSFWLTAP
DAADSRQHAAKVGRCNVCIKVAPP
NT seq 5115 nt   +upstreamnt  +downstreamnt
atgaggctcaggtgcttcctgatgctcctgaccagcaccactgttcttgggggcgacgac
acggagctttgcgccgggcgagactgttccgcctgtcgatgctttccggcgaagggagcg
aggggctctccggggtctcttgggcggcagggttctcagggacccccgggcttcccaggc
cctcagggtcctccaggagagaaaggcaagcgagggactgaaggcccagcaggacgtcag
gggccaaagggagacgcgggagctgtgggcgttcccggatttcctggtttagagggcgtc
ccgggtcacccgggcccagccggcggtcccggttttccaggtgtggacgggtgcaacggg
acgagaggaaggccgggaaagctcggacagcctggagaacaagggcctcgtggtgacgtg
ggttttcaaggagcaaagggatttccaggggagccagcgctcttcttcctccagtacccc
ggagtgcccggtgacgccggcctcgggggacttcctggtctgccgggtggaccgggtccc
agaggttcgagaggattagcgggtccggttggtcctgatggattcaatggtatccctggc
ctgccaggttccagaggtccccctggcgaacgaggtagatcggtgccgggaccgcaagga
gatgagggggagcaaggcttacaggggcctccggggccatttgagtatgtggacccccca
gaggatttctacatcaaaggagagcagggtccggcggggcctaaagggcgttgtggagct
caaggcctgccaggtctggatgcccttcctggtgtcaagggagaaaaagggattgtggga
cttcctggacccaggggactcccaggacgcttgggtctacccggttacaaaggagccaag
ggcgctgtaggaagttccggtcttccaggtctgatcggacaagaaggtccaaagggcatg
atgggagatcctggtttcaaaggcctcccgcaggaaattgccatcacacttccgggtgac
gctggagatccagggactccaggaccgacgggacctccaggagatcgtggattcatggga
gcacacgggccccgaggatcccctggtccatccataccgggactggcaggtgtgccggga
gcaagggggactccaggaagcagaggtgacaaaggtgatccgggtcaagttttcacaggt
ccagaagaatttcctggggaaactggaataccgggaagagcaggacccagaggagcaaaa
ggacaacccgggaggccaggctattactgccttcctggagtgccaggagaacctggagaa
ctcggtgaacaagggccctctggggcaccgggtgatcatggattcaaaggtcgacaaggt
gaatgctcctgcggtcctccaattgtggtgaggggacccccaggaccagcggggaagccc
ggtttggtggggtatccagggtccccaggagcccaaggaccaagaggggagaacggctgc
gcgggagacacaggtgtttctggccagccgggcctgggtggcttacctggtatcaaaggg
ttcaaaggtcaaaagggagacttcattgtggtggaaatcaaaggcaagttgaccggcttt
gactgccagtttgagatagattgctacaaggtttccctggaagaggaggacagggtggac
tcccaggactccctggaatccctggacctcaggtctttggctctcactatttgctttcag
ggagaaagttactccgcttctccgggggaccaaggccttccgggtctccctggccccaaa
ggactaaccggacaaactggcccccagggatcaggcatagttggagcaattggaaagcgg
ggggacccaggagccccaggattcccaggtttctctggcttccctggcctgaaaggtgtt
caaggcgaaacacttccttgtatacccagaaaccctggaccccgaggacagaaaggggcg
gcaggagaaacaggcccgagagggcttcctggtcctcgtggtttcaacggattcacagga
cctgatggacctaaaggagacaaaggacagtctggacttgctggaccacctggacgagca
ggaccaagaggttttgttggagataccggagttgaaggacttgaaggattcagtttttct
ggagagccagcacttgtgtatgtttttctgtatgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgcg
tgcgtgcatgtgctcgtgtgcgtgagtgagccaggctcgccaggtgcaccaggcactcct
ggacttagaggacaagctggagattcttatgtggggacctcaggacccattggctttcca
gggctggctggctctcctggacctaaaggagtaccaggtcaacctggtaaccaaggtttc
caaggggtcccaggtctacctggggttccaggaccaaagggccagagaggacaggatggt
gcaccgggaagcatgggtccccctggccctatcgctgatctgtgcaaaagaggaaaacct
ggtcccgcaggtctttctggtccacaaggagctagtggtccccagggatgttttggggag
aaaggtgacgtgggtgaaccgggatctccaggcaatggaccccctggccctgtgggcaaa
ccagggtctcctggctttcctggctatccggggcttccgggcgcccctggttcaagtgga
gactctggatttgcaggttgggatggacggaaaggtctgatgggaccccttggtaagaac
ggagtcccaggagtgcgaggattgattgggttcccaggatacccagggaggccaggagag
agaggacgttgtggacaagatggcaggccaggatgtcaaggtcccaaaggagagaaggga
cgtaaaggctacccaggaccgcctgggaagacactgggtgtcccaatcaaaggggcgagg
ggaaaacctggtccccctggtgtcaacggtttccccggtgcacgaggaaataagggtgca
caaggtcttgtgggcaagcctgggtacccaggtttcaacatgccctcgggtatcagcggg
cccccaggtccaccagggaatacgggcaaaccgggaatttccggaagacctggtcatcca
ggaccgtcgggtttccttggcttacctggagaaacaggagacacaggtgacccaggatcc
cctggaaggcccggtgaacacggtcgacaaggacgtctcggatccaaaggtgatcaagga
gagtctcgcagtcgacctggtttacctggagacaaggggccttctggagacgctgggcct
caaggtgcttctggacctcaaggtgaacctggagcacttggtttcattggcgagccaggc
cagagaggctccaaaggggatctgggacagcctggggagcaaggaccaccaggtgtgatt
gggcccccaggccccagaggtcggccaggggttccgggtcttcctggcaatacgggtgct
gacggtcccactggaccgcagggcatctttggactccaaggtcctcctggaccgctggga
cgtcatggcctcgatggactaaagggggtgaaaggtgacattggcaccagaggtctcggt
attccaggttcccaaggttctcaaggtcttccgggagataaaggcccttctggtcctcca
ggtctcccaggttcatcacagcctggtcctccaggacctaaaggcccttcaggagctcga
gggccacaaggacaagttgggccattgggtgaatctggacctgcctgtaaaaatcctcct
tcgggtatttcgggagatcctggagaccctggaccagatggagagtcaggtttccccggc
gacatgggggattcgggtcctaaccctccagttcctggtgatgatggggacagcggagac
aacggatgccctggcccaaagggagacaaaggacttccagggcccagaggacaagcaggc
acatgtggaaatcaagggttaaaaggtgagcgaggttctccaggtttgatggggatacct
ggaaatccgggctcgagaggttcgccgggaccaaccggacctctcgggtctcagggctgt
acgggtcaggcgggtccaaagggagagatgggcagagtttttccctgctccacttaccct
tcacccccacagggccctccgggaccccctgggctacctggtctactgggaaatataggt
tttcagggagacgatggatttgagggactcagaggtaagaaaggggatgctgggtgcgtt
gggccccgaggccctctggggccaccggggcctgtcggggagccaggtcgacgaggcctg
gagggtgagagaggtgcagtaggagccaaaggtgatcctggtttgaccggagaccgtgga
catcccggaccatccagacacgtgaatgcaggcttcctcatggtcatccacagccagtcc
aaaatgcctccatcttgtcctcgggggatgcaaaccctgtggttgggatacagtctcttg
tacctggaaggccaggaaaaagcgcacactcaggacctcggtcaggcgggttcgtgcatg
cgcgtcttctccaccatgcccttcgcctcatgtaacatgggaacgtgctcgtacgccggc
cgcaacgacaaatcctattggctgtcggccacggccgccgtgcccgccgtgcccgtgggc
ggagcctccatccaagagcacatcagccgctgcgccgtttgtgaggcgccctctgccccc
gtggccctgcacagccagtcgccggtggggccgccgtgcccctctgactgggcgagcctg
tggaccggattctccttcctcatgcacacgggcgccggcgacgagggcggcggtcagtca
ctgacgtcgtcgggaagttgcctgcgggacttccggccgcagcccttcgtggagtgccag
ggcccccgggggacgtgccactactttgccaacatttacagtttctggctaacggcgcca
gatgctgccgacagccgccagcacgctgccaaggtgggacgctgcaacgtctgcatcaag
gtggccccgccctga

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