Syngnathus scovelli (Gulf pipefish): 125972874
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Entry
125972874 CDS
T08785
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04142
Lysosome
sscv04144
Endocytosis
sscv05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
125972874
04142 Lysosome
125972874
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
125972874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125972874
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sscv04147
]
125972874
Membrane trafficking [BR:
sscv04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
125972874
Exosome [BR:
sscv04147
]
Exosomal proteins
Proteins found in most exosomes
125972874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
125972874
NCBI-ProteinID:
XP_049582852
LinkDB
All DBs
Position
7:9998931..10019321
Genome browser
AA seq
1684 aa
AA seq
DB search
MSQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNN
PIRRPISADSAIMNPASKVIALKAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAGFAQFKMEDNTEESTLFCFAVRGQAGGKLHIIEVGTPPTGN
QPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA
EELFARKFNTLFAAGNYSDAAKVAANAPKGILRTPDTIRRFQSVPAQPGQRSPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL
RANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQDE
EPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPMEGPLQTRLLEMNLVHAPQVADAIL
GNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLTELFESFKSFEGLFYFLGSIVN
FSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNSLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLIMVVRGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPFY
DSRVVGKYCEKRDPHLACVAYERGQCDQELIHVCNENSLFKSLSRYLVRRKNPELWASVL
LETNNYRRPLIDQVVQTALTETQDPEEVSVSVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYMEV
GQAAAQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDDKMYEAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGKEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN
HPSDAWKEGQFKDIVTKVANVELYYKAIHFYLEFKPLLLNDLLIVLSPRLDHTRTVNFFT
KVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIIEEDYVSLRTSIDAYDNFDNISLAQGLE
KHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDIELAEELLAWFLEE
DKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDAIKEKVDKL
EASESLRKQEEQATESQPIVYGTPQLMLTSGANVAVPPQQAYGYGYTAAPGYGQPPQANF
GYGM
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaaatcttgcctattcgcttccaggagcatctacagctccagaacttgggcatc
aacccagctaacattgggttcagcactctgacaatggagtcagataagttcatctgtata
agagagaaagtgggtgagcaggctcaggttgtcatcattgacatggccgatcccaacaac
cccatccgcaggcccatctctgcagacagcgccatcatgaaccctgcaagcaaagttatt
gctcttaaagcggccaagaccctgcagatcttcaatattgaaatgaagagcaagatgaag
gctcacacaatgacagatgatgtgaccttctggaagtggatctcactcaacacagttgcc
ctggtcacagacaacgcggtctaccattggagcatggagggcgactctcagccagtcaaa
gtctttgaccgccattccagcctggcaggctgccagatcatcaattatcgcactgacgcc
aaacagaaatggttactgctaatcggcatttcagcacagcaaaaccgtgttgttggagca
atgcagttgtactcggtggacaggaaggtttctcagcccattgaaggtcatgcggctggt
tttgcacaattcaagatggaggacaacacagaggagtcaactctgttctgttttgctgtt
cgaggacaggcaggcggaaaactccacataattgaagtcggcactccaccaaccgggaac
cagccatttccgaagaaggctgtagatgtatttttccctccagaagcccagaatgacttc
ccggttgccatgcagataagctccaagcaagatgtagtctttctcattaccaaatatggc
tatatccacctgtacgacttagaaacggggacctgcatctacatgaacaggattagtgga
gagaccatttttgtcactgcccctcatgagccaactgctggtatcattggggtcaacaga
aaaggacaggtgttatcggtatgtgtagaagaggagaacattattccctacatcaccaat
gtgctccagaatccagacctggctctccgcatggctgtccgcaataaccttgccggggct
gaggaattgttcgcccgcaagtttaacaccctctttgctgcagggaattactcagatgcg
gccaaagtggcagctaatgccccgaagggtatactgcgaacaccagacaccattcgcagg
ttccagagtgttcctgctcaaccaggccagcggtcaccactacttcagtattttggtatt
ttattggatcaaggccagcttaataagtttgaatctctggagctgtgcaggcctgtcctc
cagcagggccgcaaacagctgctagagaaatggctgaaagaagacaagctggagtgctca
gaggagcttggagacctggtgaagtcggtggatcccacgcttgcgctcagtgtgtacctg
cgagcaaacgtccccaacaaagtcattcaatgttttgctgaaactggccagttccagaag
attgtactgtatgccaagaaggttggctacactccagactggatcttcttgttgcggaat
gtaatgcggatcagccctgaacaggggcttcagttctcccagatgttggtgcaggatgaa
gagcctcttgctgacataacacagattgtagacgttttcatggaatacaacttgatccag
caatgcacatcctttctgctggatgccctgaagaacaacaggcccatggaaggaccattg
cagacacgtctgctggaaatgaatttggtccatgcgccacaggtcgcagatgctattctg
ggcaaccagatgttcacccattacgaccgtgcccatgtggcacagctgtgtgaaaaggct
ggtctccttcagagggcgctagaacattatactgatctgtatgacattaagcgggcagtg
gtgcacactcacctcctcaacccagagtggttagtcaatttctttggctcactgtcagtg
gaggactctttggaatgccttcgggccatgctctctgctaacatccgccagaacctgcag
atttgcgttcaggttgcctccaagtatcatgagcaactcagcactcagagcctcactgaa
ctttttgagtccttcaagagtttcgaagggttgttctacttcttgggttccattgtcaac
tttagccaggacccagaggttcactttaaatacattcaagctgcctgcaagacaggtcaa
atcaaagaggtggaaagaatttgcagagagagtaactgctatgaccctgagcgtgtgaag
aacttcctcaaggaagccaagttgactgatcaattgccattgatcattgtatgtgaccgc
tttgattttgtccacgatctggtcctatacttgtatcgcaacagtctgcagaaatacatt
gagatctatgtgcagaaggtaaacccaagtcgtctcccagtggtcattggaggtttgctg
gatgtcgactgtgctgaggatgttatcaaaaacctgatcatggtcgttagaggacagttt
tccacagatgaactagttgctgaagtggagaagagaaatcgactgaagctcctgctccct
tggttggaagctcgtattcatgaaggctgtgaggagcctgcgacccataatgcccttgcc
aagatttacatagacagcaacaacaaccccgagcgcttcttgagggagaatcctttttat
gatagccgtgtagtgggcaaatactgtgagaagagagacccccacctagcctgcgtggcc
tatgaaagaggacagtgtgaccaggaactaattcatgtgtgtaatgaaaactcgctgttc
aagagtctgtcacgctaccttgtgcgccgcaagaatcctgagctgtgggcaagtgtgcta
ctggagaccaacaactacagaagaccacttattgatcaggttgtccagactgccctgaca
gagacccaggatccagaggaagtgtctgtttcagtgaaggcttttatgactgcggacctc
cccaatgagctcattgagcttctggagaagattgtcttggataactctgtcttcagcgag
cacagaaacctccagaatctgctcatcctgacagcaatcaaagccgatcggacccgcgtc
atggagtacattaaccgtctggacaactatgatgccccagatattgcaaacattgctata
agcaatgagctctttgaggaggcctttgctatttttaggaaatttgatgtcaacacatct
gctgtgcaggttcttattgagcacattggtaatttggaccgagcctatgagtttgccgag
cgctgcaacgagcctccagtgtggagtcagctggcaaaggcccagctgcaaaagggcctg
gtcaaagaagctattgactcctacatcaaggctgatgacccatctgcttacatggaggtg
gggcaagctgcagctcagagtggaaactgggaggaccttgtaaagtttctgcaaatggcc
cgaaaaaaggcccgtgagtcatatgttgaaacagagttaatctttgctctggcaaagacc
aaccgccttgcagagctagaagagttcatcaatggacccaataatgcccacatccaacaa
gtgggtgaccgttgctatgatgacaagatgtatgaggcagccaaactgctttacaacaac
gtgtctaattttggtcgcctggcttccactctggtgcaccttggagagtaccaggcagct
gtggatggtgctcgcaaggccaacagtacacgcacctggaaagaggtgtgttttgcgtgt
gtcgatgggaaagaattcaggcttgcccaaatgtgcggcctgcatattgttgtacatgcc
gatgagctggaggaactcatcaactactatcaggaccgcgcctactttgaggagctgatc
accatgctggaggctgctttgggactggagcgggctcacatgggaatgttcacagagctg
gccattctctactccaaattcaaaccccagaagatgagggagcacttggaacttttctgg
tcccgtgtgaacattccaaaggttctcagggcggccgagcaggcccacctctgggcagag
ctagtgttcctctatgataaatatgaggaatatgacaatgctatcatcaccatgatgaac
catccttctgatgcctggaaagaaggccaatttaaagacattgtcaccaaggtggcaaac
gtggagctgtactacaaagccatccacttttatctggagttcaaacctttattattaaat
gacctgctcattgttctttccccaagactggaccacacacgtactgtcaattttttcacc
aaggtgaagcagttacctctggttaaaccatatttgaggtctgtccagaatcacaacaac
aagtcagtcaatgagtctctcaacaacctcttcatcatcgaggaagactatgtgtcacta
cgcacttccattgatgcttacgacaactttgacaacatctcgctggcccaaggcctcgag
aagcatgagttgatcgaattcagaaggatcgcagcataccttttcaagggcaacaaccgc
tggaaacagagtgttgagctttgcaagaaagacaagctctacaaggacgccatgcagtat
gcgtcagagtccaaagacattgaactggccgaggaacttcttgcgtggttcctggaggag
gacaagaaggagtgtttcgctgcctgcttgttcacctgctacgacttgttgcgacctgac
gtggtgcttgagactgcttggaggcacaatatcatggacttctccatgccgtacttcatc
caggtcatgagggagtacctcagtaaggttgatgcgataaaggaaaaggtggacaagctc
gaagcctctgagtccctgaggaaacaggaggagcaggccacagaatctcaaccaattgtt
tatggcacaccacagctgatgctcacttcaggcgccaatgttgccgtaccacctcagcag
gcgtacggctatgggtacacagcagcaccaggctatggccagccgccacaggccaacttt
ggatatggcatgtga
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integrated database retrieval system
