KEGG   Syngnathus scovelli (Gulf pipefish): 125972906
Entry
125972906         CDS       T08785                                 
Symbol
polr2eb
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC1
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
sscv  Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03020  RNA polymerase
sscv03420  Nucleotide excision repair
sscv04623  Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:sscv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    125972906 (polr2eb)
  09124 Replication and repair
   03420 Nucleotide excision repair
    125972906 (polr2eb)
 09150 Organismal Systems
  09151 Immune system
   04623 Cytosolic DNA-sensing pathway
    125972906 (polr2eb)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sscv03021]
    125972906 (polr2eb)
   03400 DNA repair and recombination proteins [BR:sscv03400]
    125972906 (polr2eb)
Transcription machinery [BR:sscv03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     125972906 (polr2eb)
  RNA polymerase III system
   RNA polymerase III
     125972906 (polr2eb)
  RNA polymerase I system
   RNA polymerase I
     125972906 (polr2eb)
DNA repair and recombination proteins [BR:sscv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      125972906 (polr2eb)
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N NYD-SP12_N NA-iREase1
Other DBs
NCBI-GeneID: 125972906
NCBI-ProteinID: XP_049582912
LinkDB
Position
10:4483719..4485516
AA seq 210 aa
MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDDFKSQFGDKPSESRPRRTDLTV
LVAHNDDPTDQMFVFFPEETKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVD
MAPKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVA
RYFGLKRGQVVKIIRPSETAGRYITYRLVQ
NT seq 633 nt   +upstreamnt  +downstreamnt
atggacgacgaagaggagacttacaggttgtggaaaattcgcaagaccatcatgcagcta
tgccatgacagaggctaccttgtaacccaggatgagttggaccagactctggacgacttc
aagagtcaatttggagacaaacccagcgagagtcgacccaggcgcacggacctcactgtg
ttggtggcgcacaacgatgaccccaccgaccagatgtttgttttcttccccgaggagacc
aaggtaggcatcaagacaatcaagatgtattgccagaggatgcaggaggagaacattaca
cgggccatcattgtggtccagatgggcatgacaccctctgcaaaacagtctttagtggac
atggcacccaagtacatcctggagcagtttctccagcaggagctcctcatcaacatcaca
gaacatgagcttgtaccagaacacattgtcatgacaaaagaggaagtgacggagctcctg
gcaagatataaactcaaggagagtcagctgcccaggatccaggccggagatccagtggct
cgctactttggcttaaagagaggacaggtggtgaaaatcatcaggccgagtgagactgct
ggccggtacatcacctacagactggtgcagtga

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