Syngnathus scovelli (Gulf pipefish): 125973322
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Entry
125973322 CDS
T08785
Symbol
xrcc5
Name
(RefSeq) X-ray repair cross-complementing protein 5
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
125973322 (xrcc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125973322 (xrcc5)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
125973322 (xrcc5)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_N
Ku_PK_bind
Ku_C
VWA_2
DUF6005
Peptidase_M57
Motif
Other DBs
NCBI-GeneID:
125973322
NCBI-ProteinID:
XP_049583341
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Position
8:complement(11249484..11256067)
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AA seq
729 aa
AA seq
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MSKSKSFHVLCMDVGLSMSNSAPGEESPFELAKQVIQKFVQRQVFAELKDELALVLFGTD
STKNPLAEDGQYQNITVHRNLMLPDFELLEEIENQVHPENQQADWLDALVVCMDLLQTGI
KGKRYDRLNIYFLSDLSVEADTEQLDVIVENLKQADITLQFFLPFSAEDESMDEADNERR
GGPGARGSGKALSKEQKTGLEMVKHIMLCLDEEDGLDQIYTLRNAIEGLCMFKHIERRPM
AWPCQLTIGSALPIRIVGYKAVTEEKLKKTWLTVDAQSNESDHVKKETVFCLDDDDETEV
QKDDIVQGFCYGSDIVPFSKVDQEQMKYTHDGKCFAVLGFTNQNLVPRHSFMGTQAIKIF
APSGDQHAGVALSALVRALDELKMVAIVRYAYDRRANPQVGAAFPCIKLNYECLIYVQLP
FMEDLRHFTYASLNSKKFSPSDTQLQAVDSLIDSMMLMEKDEDGDLKDLVKVHHIPNPEF
QRLFQCLHHRAVSPGTALPPMEPWLAAVLDRPDVIEERCRAPLQEVKKAFPLKVVEKKKQ
LKTSEQIFGKDSEQPDAKKAKGDMAEEEVEEEYNLADISEGSVTSVGSVNPARDFRILIK
QNTLPFQGACEQLTHRIEQLLGNKNTQYYMKSITCIQAFREQSVKLGKADLYNSYLQSLK
GSITNRGLEVFWDLIVQASISLISQDEVEGSSVSKNEAAQFLLAEEKNEEPVATMEDDAG
DVDDLLDNM
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagtcgaaatcgtttcatgtgctttgcatggatgttggactttccatgtccaac
tcggcaccgggtgaagaatctccatttgaactagccaaacaagtcattcagaagtttgtc
caacgtcaggtgtttgctgaactcaaggatgaattggctttggttctgttcggcacagac
tcgaccaagaacccgctggctgaagatggccagtaccaaaatatcactgttcaccgcaac
ctgatgttacctgactttgagcttttggaggagattgagaatcaggtccacccagagaat
caacaggcggactggttagatgctcttgtggtctgcatggatcttcttcaaacaggaata
aagggaaaacgctatgatcgactaaatatttacttcctgagtgacctcagtgttgaagca
gacacggaacaactggacgtcattgttgaaaacctgaaacaagctgacattacgctacag
ttctttttacccttctctgctgaagatgaatcaatggatgaagctgacaatgagagaaga
ggaggtcccggtgcaagaggctcgggcaaagccttgtccaaggaacagaaaactggatta
gagatggtcaaacacatcatgctgtgcctggatgaggaggatggtctagatcagatttac
actctcagaaacgctatcgaagggctgtgtatgttcaagcacattgagagaagacccatg
gcgtggccctgtcagctgaccatcggcagcgctctgcccattcgcatcgttggctacaaa
gctgtgacagaggagaagctgaagaaaacgtggctcacggtggacgcacagagcaacgag
agcgaccatgtcaagaaagagacagtcttctgtctggatgacgatgatgagacggaagtg
cagaaggatgacatagtccaaggtttttgctatgggagtgatatagttccattctccaaa
gtggatcaagagcagatgaaatacacacacgatgggaagtgctttgccgttttaggtttt
accaaccaaaacctggttcctcgtcactccttcatgggaacgcaggccatcaagattttt
gctccaagcggcgatcagcatgctggtgtggcactgtctgctcttgtccgggcgctggat
gagctcaaaatggtggccattgttcggtatgcttatgaccgacgggccaaccctcaagtt
ggagcagctttcccttgcatcaagttgaactatgagtgtctcatctacgtccagttgccc
ttcatggaagacctcagacacttcacttatgcttctctgaacagcaagaaattcagcccc
tcagacactcagctgcaggctgtcgattctctcatcgactctatgatgttgatggagaaa
gatgaagatggagacctaaaggacttggtcaaagtccaccacattcccaacccagagttc
cagaggcttttccagtgcctgcatcatcgagccgtcagccccggcacagccctcccccca
atggagccatggctggcggctgtactggaccgcccggatgtcattgaggagcgttgtcga
gcgccactacaggaggtgaagaaggcgtttcctctcaaagtagtggagaagaagaagcaa
ctgaagactagtgaacagatatttggaaaagactctgagcagccggatgccaagaaggca
aagggagatatggcagaggaggaggtagaggaggagtataatctggctgacatttctgaa
ggctctgttacttcggtcggaagcgttaatcccgcccgtgacttccgcatcctgatcaag
caaaacacgcttccattccaaggggcctgcgagcagctgactcacaggatagagcagttg
ctaggcaacaagaacacacagtactacatgaaaagcatcacctgtatccaggccttcaga
gaacagtctgtaaagctggggaaggccgatctgtacaatagctacctccagtcgctgaaa
ggaagcatcacaaacagagggctggaagtcttttgggacctgattgttcaagcctccata
tcacttattagccaggacgaggtggaaggaagctctgtgtccaaaaatgaagctgctcag
tttctcctggctgaagagaaaaacgaagagccagtcgcaacaatggaagatgacgctggc
gatgttgacgacttgctggacaacatgtaa
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