Syngnathus scovelli (Gulf pipefish): 125973378
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Entry
125973378 CDS
T08785
Symbol
dync1i2a
Name
(RefSeq) dynein, cytoplasmic 1, intermediate chain 2a isoform X1
KO
K10415
dynein cytoplasmic 1 intermediate chain
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04145
Phagosome
sscv04814
Motor proteins
sscv05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
125973378 (dync1i2a)
09142 Cell motility
04814 Motor proteins
125973378 (dync1i2a)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
125973378 (dync1i2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sscv03036
]
125973378 (dync1i2a)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sscv04812
]
125973378 (dync1i2a)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
125973378 (dync1i2a)
Cytoskeleton proteins [BR:
sscv04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
125973378 (dync1i2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
WD40
WDR55
Beta-prop_EML
Dynein_IC2
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_RIG_2nd
EIF3I
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
Beta-prop_HPS5
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_IP5PC_F
RAB3GAP2_N
Beta-prop_DCAF4
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
125973378
NCBI-ProteinID:
XP_049583459
LinkDB
All DBs
Position
8:8755449..8765585
Genome browser
AA seq
627 aa
AA seq
DB search
MSDKSELKAELERKKQRLAQIREEKKRKEEERKKKEADQLKDTAVHHEESDLEKKRNEAD
ALLQSFGIASDVSVAAPPTSPTAKSADTLSETGSQDSDGAPGPRTLHWDSDPSTLQLHSD
SELGRGASKLGMAKVTQVDFPPRETVSYTKETQTPVITQQKEDEEEEEEVAPPQTVVETP
IEKPDLNEEEEVTLHELTEEEKLQILHSEEFVNFFDHSTRIIERALSEHVDLFFDYSGRD
LEEKEGEIQGGTKLSLNRQFTDERWSKHRVVTCLDWSPQYPELLVASYNNNMDAPHEPDG
VALVWNMKYKKTTPEYVFHCQSAVMSTSFAKFHPNMVVGGTYSGQIVLWDNRSNKRTPVQ
RTPLSAAAHTHPVYCVNVVGTQNANNLISISTDGKMCSWSLDMLSQPQDSMELVFKQSKA
VAVTSMSFPLGDVNNFVVGSEDGSVYMSCRHGSKAGISEMFEGHHGPITGIDCHTAAGPL
DFSHLFVTSSFDWTVKLWSTKNNKPLYSFEDNSDYVYDVMWSPTHPALFACVDGVGHLDL
WNLNNDTEVPTASVTVDGNPALNRIRWAPSGREIAVGDSDGRVLVYDIGEQIAVPRNDEW
SRFVRTLAEINENRDDAEELAAQRLAA
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacaaaagcgaactaaaagcggagcttgaaagaaagaagcaacgcttggcccaa
atcagagaggaaaagaaaagaaaggaagaggaacgcaaaaaaaaggaggcagatcaactg
aaagatactgccgttcaccatgaagagtctgacttggagaagaagcgcaatgaagccgat
gccctgctacaaagttttggtatcgcctcagatgtttctgtcgccgctcctcccacgtct
ccaactgccaaatcggcagacaccttaagcgagacggggagccaggactcggatggagct
ccgggaccaaggactctacactgggactctgacccgtctactcttcaacttcattctgat
tctgagctggggcggggcgcttccaaacttggaatggccaaagtcactcaggtggacttc
cctccacgggagactgtgtcttatacaaaagagacccagacacctgtcataacacagcaa
aaagaagatgaggaggaggaggaagaagtcgctccgccacagaccgtcgtcgagacaccg
atcgagaagcccgacctcaatgaggaagaagaagtgaccctccatgaactgaccgaggag
gagaaattgcagattttgcactcggaggagtttgtgaatttcttcgaccatagcactcgc
atcatcgagcgagctctgtcggagcacgtggacctcttcttcgactacagcggccgcgac
ctggaagagaaggagggtgaaattcagggcggaacaaaactttcgctcaacagacaattc
acagatgaacgctggtccaagcatcgcgttgtcacgtgtctggattggtcgcctcagtac
cccgaacttctagttgcctcctacaacaacaacatggacgctcctcacgagccagacggc
gtggctttagtgtggaacatgaagtacaagaagaccacaccagagtacgtcttccactgt
cagtctgcagttatgtccacctccttcgccaagttccaccccaacatggtcgtcgggggc
acatactcgggccaaattgttctgtgggacaacaggagcaacaagaggactccggtgcag
aggacgcccctatctgctgccgcgcatacgcacccggtctactgcgtcaatgtggtcggc
acccagaacgccaacaacttgattagcatctccaccgatggcaagatgtgctcctggagc
ctggacatgctctctcagccacaggacagcatggagctggtgttcaagcaatccaaagcc
gtagccgtcacctccatgtccttcccgttgggagacgtcaacaatttcgtggtgggcagc
gaggacggctccgtctacatgtcgtgtcgtcacggaagcaaagcaggcatcagcgaaatg
tttgagggccaccatggaccaatcacgggaatcgactgtcacacggccgctggaccgctg
gacttctcccatctctttgtgacctcctcttttgactggaccgtcaaattgtggagcact
aagaacaacaagccgctctactcgttcgaggacaactctgactacgtctatgacgtcatg
tggtctccgactcacccggctctgttcgcttgcgtcgatggcgtgggccacttggacctg
tggaacctcaacaacgacacggaggtcccaacagctagcgtgactgtggatgggaacccg
gctctcaacaggatccgatgggctccatctggaagagaaattgctgtgggagattcggac
ggacgagtcctagtgtatgacattggagagcaaatcgctgttccgcggaatgacgaatgg
agccgcttcgtccgcacgctggcagagatcaatgagaaccgagatgatgccgaggagctg
gcggcacagcgtctggccgcgtga
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