Syngnathus scovelli (Gulf pipefish): 125973449
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Entry
125973449 CDS
T08785
Symbol
lsm7
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018
RNA degradation
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125973449 (lsm7)
09123 Folding, sorting and degradation
03018 RNA degradation
125973449 (lsm7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125973449 (lsm7)
03041 Spliceosome [BR:
sscv03041
]
125973449 (lsm7)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125973449 (lsm7)
mRNA degradation factors
5'-3' decay
Lsm complex
125973449 (lsm7)
Spliceosome [BR:
sscv03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
125973449 (lsm7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
125973449
NCBI-ProteinID:
XP_049583548
LinkDB
All DBs
Position
10:complement(6619260..6620481)
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AA seq
103 aa
AA seq
DB search
MADKEKKKKESIFDLSKYIDKPIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDD
QLKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq
312 nt
NT seq
+upstream
nt +downstream
nt
atggcggataaagaaaagaagaagaaggaaagtatctttgacttgtctaagtacatcgac
aagccaattcgggttaagtttcaaggaggacgagaagcgagtggtgtccttaaagggttc
gaccctctattgaaccttgtattggacggtaccatcgagtatatgcgtgatcctgatgac
cagctcaaactgacagaagacaccaggcaactgggtctggtggtctgcagggggacctca
gtggtgctcatttgtccacaggatggcatggaagctattccaaatcctttcatacagcag
caggatggctaa
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