Syngnathus scovelli (Gulf pipefish): 125973481
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Entry
125973481 CDS
T08785
Symbol
sox1a
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125973481 (sox1a)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
125973481 (sox1a)
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Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
125973481
NCBI-ProteinID:
XP_049583626
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Position
8:complement(16390574..16396184)
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AA seq
385 aa
AA seq
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MYSMMMETDLHSPGPQTNTAGGQTGPNTGSKASQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGAGGAGVGLGVGMASSSAAQRLESPGASHGGSAGSGYAHMNGWANGAYPGQ
VAAAAAAAAMMQEAHLAFGQHPGGGAHHLNHHHHHAHPHAHHAHHHHHHAHNPQPVHRYD
MSTLQYSPISNSQSYMSASPSGYGALSYTQHQGSGVSSSSSSSSSSSSSSAAAAAAAAAA
AASSSMGTLGTLGSLVKSEPSVSPPVSGGPHARGPCPGDLREMISMYLPTGEPADPAMQS
RLHALPAHYQSAAAGVNGTVPLTHI
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagaccgacctccactcccccggcccccaaaccaacacggcc
ggggggcaaacggggcccaacacgggctccaaggcgagccaggagcgggtgaagaggccc
atgaacgcattcatggtgtggtcccgcggccagcgtaggaagatggcgcaggagaacccc
aaaatgcacaactccgagatcagcaagagactgggggccgagtggaaggtgatgtccgag
gcggagaagcggcccttcatcgacgaggccaagaggctgcgggccatgcacatgaaggag
cacccggattacaagtaccggcccaggcggaagaccaagacgctcctcaagaaggacaag
tactcgctggccggcggtcttctctccggagccggcggcgcaggagtgggtttgggtgtc
ggcatggcgtcctcctcggcggcccagaggctggagagcccgggtgcgtcccacggagga
tccgcgggttccggctacgcgcacatgaacggctgggccaacggcgcctacccgggccag
gtggctgctgccgcggcggccgctgccatgatgcaggaggcgcacctcgccttcggccag
cacccgggcgggggcgcgcatcacctcaaccaccaccaccaccacgcgcacccgcacgcc
caccacgcgcaccaccatcaccaccacgcgcacaacccgcaacccgtgcaccgctatgac
atgagcacgctccagtacagccccatctcgaactcgcagagctacatgagcgcctccccg
tccggttacggcgccctcagctacacgcagcaccaaggctccggcgtgtcttcttcttcc
tcctcctcctcctcttcgtcgtcctcctccgccgccgccgccgcagcagccgccgccgcc
gctgcctcctcctccatgggtacacttggcacgctgggctcgcttgtcaaatcggagccc
agcgtgagcccgccggtcagcggaggcccccacgcgcggggcccctgtcccggtgactta
agggagatgataagcatgtacttgcccactggggagccggcggaccccgccatgcagagc
cggctgcacgctttgccggcgcattaccagagcgccgcggccggggtaaacgggacggtc
ccgctcacacacatctaa
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