Syngnathus scovelli (Gulf pipefish): 125973511
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Entry
125973511 CDS
T08785
Symbol
pms1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125973511 (pms1)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
125973511 (pms1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HATPase_c_3
HMG_box
HATPase_c
HMG_box_2
CDH1_2_SANT_HL1
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
125973511
NCBI-ProteinID:
XP_049583726
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Position
8:complement(17750223..17767655)
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AA seq
858 aa
AA seq
DB search
MLLTPDEVMKQLPADTVRLLSSSQVITSMTNVVKELLENALDAGASIIDIKLENYGLDRI
EVRDNGCGIKAADAPVMAVRHFTSKIHNHEDLERLQTYGFRGEALGSVCAVAEVTITTKS
ENDDISTQYTLNAQGSIVSQKPTHFGQGTTVSVMKLFKNLPVRRQYYSSAKRCKDELKKM
QDLLVAYAIIKPQLRLTLSHNKVAVWQKAKAADRKSALLATLGSSTLANLLPCHHRQEQA
EILLEGFFPKPGADVALTSTCVPDKTFIFVNDRPVHHKDIMKLLRQHYAAQYADESAQNR
YPILTLEITVSPSALDVNLTPDKTQVLLHNKEALFTALEALLVSLYGYRPACHTPADQIG
RGTSSLPSAAGEPEDATAPPSGRASDGSSSAPEDQIVGQAPDGFDSNFSLGDDQTGHVPS
EVPEELEVDVSGPRISAEDWSRGTALTDPVSGEPLQPVRIHQAAEQTETNKKTFNVITEK
RAALTAFDLISNRTMRAPLSPVALFEKQARVEVLREKPSASLKEISDAVDNRWKKLMEDE
RKKYEEKAQKHQEHHKRTCAAKLAGGWKEKPASPALAWKRKTPLSNQQLLDELFSAPPPQ
KKPRTPKPCQPLPCCVSSLGARLRRLWATRNTAAPRGLHLINRLPSQSVWIILCGQRLML
LNPFRVQESLLLKRLLQNQMVPAVTLQNALQVTEGSLGGRDHMETLCNMERASPDVNGRV
FISDPRLVANGFRIRLTPGAVSTDGHLEVTALADCVPFLGLEDLGEIVTAVLRRKAKSVQ
ECRPLKVSNYLLTEAVRLARQMPTRLSKEDVEDILRRMQEQLGESERTCLHGRPFLQPLC
DIPQTERQAKALFKPLEL
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgttgctgactccggacgaggtcatgaagcagctgcccgcagataccgtgcggctcttg
tccagctcacaggtcatcacttcgatgacgaatgtagtgaaagaactgcttgagaacgca
ctcgatgctggagcttcaatcattgacatcaaactggagaactacggcctggatcgaatc
gaggttcgcgacaacggctgcggaatcaaagctgccgacgcccccgtgatggccgtgcgc
catttcacctccaagatccataaccacgaggacctggagcgcctccagacgtacggcttc
aggggcgaggcgcttggttctgtttgcgccgtggcagaggttaccatcactaccaagagc
gagaacgatgacatcagcacccagtacactcttaacgcccaaggcagcatcgtttctcag
aagccaactcactttggccaaggtacaacggttagcgtcatgaaacttttcaagaacctt
cccgtgagacgacaatactattcgtcggcgaagaggtgcaaggacgaattgaaaaaaatg
caggacctgcttgtggcctacgccatcataaaaccccaattgagactcacactctcacac
aacaaggtggcggtgtggcagaaggccaaggcggccgaccgcaagagcgccctcctggct
acgctgggctccagcacactcgctaacctgctcccgtgtcaccatcgtcaggagcaagca
gagattcttctcgagggttttttcccaaagccgggagcagacgtcgctttgaccagcacg
tgcgttccagacaaaacgttcatattcgtcaacgatcgtcccgtccaccataaggacatc
atgaagctacttcgccaacactacgccgcgcagtatgcggacgagtcggcgcaaaaccgc
taccccatcctgacgctcgaaatcaccgtttccccctcggcgttagatgtcaatctcacg
cctgacaagacccaggttcttctccacaataaggaagccttgtttaccgcgttggaagcg
ctgctggtttcgctctacgggtatcggcccgcttgccacactccggccgatcagatcggc
cgcggtacctcatctttgccatctgccgctggagagccagaggatgccaccgcgccaccg
agcgggcgggcttccgacggtagctcctcggcgccggaggaccagattgtcggccaggcg
cccgacggatttgattccaacttctctctaggtgatgaccaaactggacacgtgccaagt
gaagtccccgaagaactcgaggtggacgtgagcggaccgcgcatatcggcggaagactgg
agtaggggcacggcgctgacagacccggtatcgggagagcccctgcagcccgtcagaatc
catcaagccgccgagcagacggagacaaacaaaaagacgttcaacgtcatcacagaaaag
cgagcggctctgaccgcctttgacctcatcagcaaccggacaatgagagcgccgctgtct
ccggtcgccctgtttgagaagcaagctcgcgtggaagttctgagggagaaaccgagcgcc
agcctaaaggagatcagcgacgccgtcgataacaggtggaagaagctcatggaggacgag
cgcaagaagtatgaggagaaggcccaaaagcaccaggagcaccacaaacgcacttgcgct
gccaaactcgccggcggttggaaagagaagcccgccagccccgctctggcttggaagcgc
aagacgccactgtccaaccagcagctgctggacgagctcttctcagctccgccgcctcag
aagaagccccggactccaaagccctgtcaacccctcccttgttgcgtgtccagcctgggc
gcacggctccggcgcctctgggcgacccggaacacggcggcgccgcgggggctccatctt
ataaaccggctgccctctcagagcgtctggatcattttatgtggtcagaggctgatgttg
ttaaacccctttcgggtccaggagagcttgctgctgaagagactcctgcagaatcaaatg
gttccagcggtcactctgcaaaacgctctgcaagtaacagaaggaagtttagggggacga
gaccacatggagactttgtgcaacatggagagagccagccccgatgtcaacggcagggtg
ttcatctccgacccaagactggtggccaacggatttcgaatcagactcacgccaggcgcc
gtgtcgaccgacggacatctggaagtgacggcgctggccgactgcgtgcctttcctgggc
ttagaggacctcggggagatcgtgacggcggttcttcgcaggaaggccaaatctgtgcag
gagtgtcgcccgctcaaagtctccaactacctgctgaccgaagccgtgcgactggcccga
cagatgccgacgcgtttgtccaaggaggacgtggaggacatcctgagacggatgcaagag
cagcttggtgagagcgagcgcacctgtttgcacggaaggcctttcctccagccgctgtgt
gacatccctcagacggagcgccaggccaaagcactctttaaacctttggaactgtga
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