Syngnathus scovelli (Gulf pipefish): 125973546
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Entry
125973546 CDS
T08785
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1 isoform X1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04622
RIG-I-like receptor signaling pathway
sscv05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
125973546 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
125973546 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sscv04054
]
125973546 (ifih1)
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125973546 (ifih1)
Pattern recognition receptors [BR:
sscv04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
125973546 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
DEAD
ResIII
Helicase_C
CARD
SWI2_SNF2
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-GeneID:
125973546
NCBI-ProteinID:
XP_049583804
LinkDB
All DBs
Position
8:complement(8244982..8253378)
Genome browser
AA seq
968 aa
AA seq
DB search
MSASENDLINENLIESFRSRLRAYVAVEPVLDYLHFLEPEQKEGIQQRARKDGNSAAVDV
LIGAVLRKPHPEGWFQAFVDALSHAECQHAADVMRGKLPDAAVEAENDICMRMIDILVPS
LVGMDTKEVCTQCYARKLIAKYDQDQILHLAANQGQRDAARELLKRIVRCPPGWYSQFVQ
ILRDTEHNALYKLLGGCSDDTAAKTTRSEPGKANPESSTCQHLDDKDTENDTIDLYQSEG
ACEGEEAAPKLSSSLERLPLAIGDLDKDDIELRDYQMDVAKPALEGKNIIICLPTGSGKT
RIAVYITRKHLDRKRAEGKTGKVVFLVNMVPLVEQHYTNEFHPFLKHAYKVERVSGQSMH
KISFTEIVKNNDVIICTAQILENYLEKTLKGEDEGIHLKDISLIIIDECHHTKKDEVYNR
VMMRYLKQKNKNRIVRKEQKEIVPLPQILGMTASLGVGDATLQKAAENYILQICANLDAS
QIRTGNLGNHCKEPDKKIVHVEDKEKDPFGDVIKKIMNVIQMHAELSPTCELGSQSYEQW
VVQREQQAAKEEDQKVRVCMEHLRRYNDALIVSNTIRMCDAFRFLNKKHEEELKSKSNPD
DEHVINISDTERELFKLFRENKKELEKLSENQSYENDSLSKLQRTVLHQFTTTKDARGIV
FTKMRQSAIALSHWIQENSKFADVGVKVSYVIGGGNQSVVKPMTSTEQKAVLNKFRSGDV
NLLIATSVAQEGLDIPDCNFVICYGFVTNDIAMIQAKGRARAQNSNYIVIEVKGSGVTEK
EFVNEYRVNLMSKAIARIQAMDPAEYNKQIEEYQIQALLEDKMRMTNNKKHKKLALPSEV
KLSCRHCSKFVCTGDDIQIIEGMHHVNVSSQFRELYIQKGHTSLQELFDYETNCTIACKD
CGLTWGTMMMYRAIEWPCLCVKNFVVTIKEKKFSKYTKWRDLPAKFPAFDYIEHASRLAL
DSDEEFES
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcatccgagaacgacttaatcaatgagaatctaatcgaaagctttcggtcgagg
ctccgagcgtacgtcgcagtggagccagttttggactatctgcattttctcgaaccggag
caaaaggaaggcatccaacaaagggcccgcaaggatggcaactcggcggcggtggacgtc
ctgatcggtgccgtgctccgcaaaccgcacccggaaggctggttccaagccttcgtggac
gccttgtcccacgccgaatgccaacatgcggccgacgtcatgcggggaaagctgcccgac
gccgcggttgaggccgaaaacgacatctgtatgcgaatgattgacatccttgtgcccagt
ctggtgggcatggacactaaagaggtgtgcacgcaatgttatgcgagaaagctcatcgcc
aagtacgaccaagaccaaatccttcacttagcagccaatcaaggacagagagacgcagct
cgtgaacttctgaaaagaatcgtgaggtgtcccccaggatggtactcgcaatttgtccaa
attctgcgcgatactgaacacaatgccttgtacaaactgctgggaggctgttctgacgat
accgcagctaagactacaagaagtgagccggggaaggccaatccagaaagttctacatgt
cagcatttggatgacaaggacactgaaaatgacaccatagacttgtaccaaagtgaagga
gcatgtgaaggtgaagaagccgcacccaagttaagcagcagtttggagcgtttgccacta
gctattggagacctggataaagatgacattgagcttcgagactatcagatggacgtggct
aaacctgccttggaagggaaaaacatcatcatatgcctcccgaccggaagtggtaaaacc
aggatagcggtctacattacccgcaagcatctggaccgcaagagggcagaggggaaaact
ggcaaagtggtctttctggtcaatatggttccacttgttgagcagcactacaccaacgaa
ttccatccctttctgaagcacgcgtataaagtggaaagagtcagtgggcaatctatgcac
aaaatctctttcacggagattgtgaagaacaacgacgtcatcatttgcacagctcagatt
ctggaaaactacttggagaagacactcaaaggagaggacgagggaatacatctgaaggat
atctccctgattataatagacgagtgtcatcacaccaagaaggacgaggtctacaaccga
gtgatgatgcgttacctgaagcagaagaacaagaacaggattgtgcggaaggagcagaag
gagattgtgccgctgcctcagatcctggggatgacggcctcgctgggggtcggcgacgcc
acactacagaaggcagcggagaattacattttgcagatttgtgctaatttggatgcttct
caaatccggactgggaatctcgggaatcactgcaaggaaccggacaaaaaaattgtacat
gttgaggacaaagaaaaggacccgtttggtgatgtcatcaagaaaatcatgaacgtgatt
caaatgcatgccgagctgagtcccacctgtgagcttggctctcagagctacgaacagtgg
gtggttcaacgcgagcaacaagcggccaaagaggaagatcagaaagtgcgagtttgcatg
gagcatcttcggcgatacaacgacgccctgatagtcagcaacaccatccgcatgtgcgac
gccttccgtttcctgaacaaaaaacacgaggaagagttgaagagtaaatccaaccctgat
gacgaacacgtcataaacattagcgatactgagagagaactcttcaagttattccgagaa
aacaagaaggaacttgaaaagctttctgagaaccaatcttatgaaaatgacagcttgtca
aaactacaaagaaccgttctgcatcagttcaccaccaccaaggacgccaggggaatcgtt
ttcaccaaaatgcgacaaagcgccatcgctctcagtcactggattcaggagaactccaag
tttgccgacgtcggcgtaaaagtgtcctacgtcatcggcggcggaaaccagagtgttgtc
aaaccgatgacatctacagaacagaaggctgtcttgaacaaattccgcagcggtgatgtc
aacttgctgattgccacctcagtggcacaggaaggtttggacataccggattgcaacttt
gtcatctgctatggctttgtgaccaatgacattgccatgatacaggctaaaggcagagct
cgggctcagaacagcaattacatcgtgattgaggtgaaaggctctggagtgactgagaag
gaatttgtcaatgagtaccgagtgaatttgatgagcaaagcaatcgcgagaatccaagca
atggatcctgctgaatataacaaacagatcgaagaatatcaaattcaggctcttcttgaa
gacaagatgagaatgacaaataataagaaacataaaaagcttgcgcttccgtcagaggtg
aagttaagctgccgacattgcagcaagtttgtctgcaccggtgatgacatccagatcatt
gaaggcatgcaccacgtcaacgtttcatcacaatttagagaactatatatccagaaagga
cacacttctcttcaggaactttttgactatgaaaccaattgcaccatagcatgcaaagat
tgtggattgacatggggaacaatgatgatgtaccgagcaatcgagtggccctgcctatgt
gtgaagaattttgttgtgacaatcaaagagaagaagttcagcaagtacaccaagtggcgg
gatctccccgccaagttcccggcgtttgactacatcgagcacgccagccgcttggctctg
gattctgacgaagaatttgaatcttga
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