Syngnathus scovelli (Gulf pipefish): 125973549
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Entry
125973549 CDS
T08785
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125973549 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125973549 (prpf40a)
Spliceosome [BR:
sscv03041
]
Complex A
U1 snRNP components
U1 related factors
125973549 (prpf40a)
Complex B
125973549 (prpf40a)
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
125973549
NCBI-ProteinID:
XP_049583811
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Position
8:complement(7824372..7836692)
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AA seq
872 aa
AA seq
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MMGPPGIPPHFPPMGMPPMGQRPPSMTPMPPGIMPPGMLPSMSAPPMGQIQGMMPPMMGM
MLPPRLPAATVQPTGPTAAVVDILNKELISPSLSSQQPGVDTPAAPGTTSTTNGSSQEEP
PKKKSLWTEHKSLDGKTYYYNTETKQSTWEKPEDLKSPAEQMLSKCPWKEYKSDTGKPYY
YNSQTKESRWTKPKELEDLEAMIKAEENGTTEVAAPKVATEPVPQVETTQVSAAPVVEAE
PVDVVPEEQPSLVASQHTAEVKTVDTPVASTETGAPAEAPASDEATKEELRPEIQKKVFK
WNTKEEAKQAFKELLKEKGVSSNSSWEQAMKLIINDPRYSALPKLSEKKQAFNAYKVQTE
KEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFNDLEVWSCVPERDRQEIYE
DVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEEL
QNMDKEDALICFEEHIRALEKEEEEDKQKSLLRERRRQRKNRESFQKFLDELHDHGQLHS
MSAWMEMYPTLSSDIRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDKSYL
VEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKEAA
FKTMLKQATPALEPEDAWEAVRERFLKEAAFEDITLESERKRIFKDFMHVLEHECQHHHS
KTKKHSKKSKKHHRKRSRSRSGSESEEEEYHKKKKRSASKTPSERSSSGESERSYKKSKK
HKKKAKKRRHKSGSPDSDVADKKGRDGKRDKDNDKDKDGDKARGKSHSDVKHKSPKGKAA
KEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgatgggaccacctggaataccacctcatttccctcccatggggatgcccccgatggga
caacgaccgcccagcatgacccccatgccgcctggtattatgccacccggtatgctgcca
tcaatgtcagcgcctcctatgggacagattcaaggtatgatgccacccatgatggggatg
atgctgcctcctcgcctgccagctgcaactgtgcagccaactggcccgacagctgctgta
gttgacatattgaacaaagagttgattagtccttctttgtcttctcaacagcctggcgtt
gacaccccggctgcgccaggaaccaccagtacaacaaatggatcttcacaggaagagccg
ccgaagaagaaatcgctgtggactgaacacaaatcactggatggcaaaacctattactac
aacacggagaccaaacagtccacctgggaaaaaccggaggatctaaagtctcccgcagag
caaatgttatccaaatgtccttggaaagagtacaagtccgacacggggaagccgtactac
tacaactcccagacaaaggagtcacgatggaccaaacccaaagagctggaggatctggaa
gccatgattaaagctgaggagaatgggacgacagaagtagcggcgcctaaagtcgccacc
gagcccgtgccgcaagtcgaaaccacacaagtgtctgcggcccccgtcgtcgaggcggag
ccggtcgacgtcgtccccgaagagcaaccgtctttggtggcctcacagcacacggctgag
gttaagaccgtcgacacacccgtggcttcaacggagactggcgcccccgcagaagccccg
gccagtgatgaagccacaaaggaagaactacgtccagaaattcaaaaaaaagttttcaaa
tggaacaccaaagaggaggccaagcaggctttcaaggagctgcttaaggagaagggtgtg
tcctccaactcttcatgggaacaggctatgaaattgattatcaatgacccccgctacagc
gctctccccaagctgagcgagaagaagcaagcctttaacgcctacaaggtccagacggag
aaggaagaaaaagaggaggccaggattaaatacaaagagtccaaagaaaccttccagagg
ttcttggagaaccatgaaaagatgacgtccaccaccagatacaagaaagcagagcagatg
ttcaacgacctggaggtgtggagctgcgttcccgagagagacagacaggagatctatgaa
gatgtcttgttttacctggccaagaaggagaaggagcaagccaagcagctgagaaagagg
aattgggaagctctgaagaacattctggacaacatggccaacgtcacctaccgcaccacc
tggtcagaggctcagcagtacctgcttgacaatcccacctttgctgaggatgaagagctg
caaaacatggacaaagaggacgcgctgatttgctttgaggagcacatccgtgccctggag
aaggaagaagaggaggacaagcagaagagtcttctgagggagaggaggcgacagcgcaag
aacagggagtcctttcagaaatttctggatgaactccacgaccacggccagcttcattcc
atgtcggcctggatggagatgtaccccaccctgagctcggacatccgctttgccaacatg
ctgggtcagccaggctccactcctctggaccttttcaaattctacgtggaagacctgaag
gcacgataccacgatgagaagaggattatcaaagatatcctgaaggacaagagctatctg
gttgaagttaacaccagctttgatgactttggatccgtcatcagctcagacaagagagcc
accacactcgatgccggaaacatcaagttggctttcaacagtttgctagagaaggcagaa
gccagggagcgcgagcgtgagaaggaggaggcgagaaagatgaagaggaaagaggcggcc
tttaagaccatgctgaagcaggccacgcccgccctggagccagaggacgcgtgggaagcc
gtgagggagagattcctaaaggaggcggcctttgaagacatcacgctggagtcggagagg
aagaggatcttcaaggacttcatgcacgttttggagcacgagtgccagcatcatcactct
aagaccaagaagcactccaagaagtccaagaagcaccacaggaagcgatcccgctctcga
tcgggctccgagtctgaagaggaggaataccacaagaagaagaagcgctcggcgtccaaa
accccgtcggagcgctcctccagtggcgagtcagagagaagctacaagaaatctaagaag
cacaagaagaaggccaaaaagagacgacataagtctggctcacccgactcggacgtagcc
gacaagaaaggacgagacggcaagagggacaaagacaacgataaagacaaagacggggac
aaggcccgagggaagtcgcactcggacgtcaagcacaagtcaccaaaaggcaaagccgcc
aaggaggagggtggctgggatacgtcaggaagtgaactgagcgaaggcgaactggagaaa
agaagacgaactttactagagcagctggatgcgccgtaa
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