Syngnathus scovelli (Gulf pipefish): 125973617
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Entry
125973617 CDS
T08785
Name
(RefSeq) protocadherin-17
KO
K16499
protocadherin delta 2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sscv04515
]
125973617
Cell adhesion molecules [BR:
sscv04515
]
Cadherins
Protocadherins
125973617
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
DUF4788
Cadherin_C_2
Fibulin_C
Motif
Other DBs
NCBI-GeneID:
125973617
NCBI-ProteinID:
XP_049583953
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All DBs
Position
8:complement(11834058..11848221)
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AA seq
1091 aa
AA seq
DB search
MRLSVPIFLLLWVKALTLKNLSYSVPEEQGPGTVIGNIAKDGGYGTLERGKKSNFRVLEN
SAPHLVDVDPESGLIFTKQRIDRETLCRRNPKCQLSMEVFANDKEICMIKIDIQDINDNL
PSFPSDHINIDISENAAAGTRFPLTIAHDLDTGENGIKTYQVTRDDYNTFSLDLKVRGDG
TIYPELVVQRPLDREDQSHHTLLLTAIDGGEYPRSGSMQINVRVTDSNDNSPIFEKSSYV
LELTENSPPGKILIDLNATDHDEGSNGQVVYSFTGYASERIQDLFSIDPNSGVIKVQGEI
DFEENPIIEFDVQAKDLGPNPIPGHAKITVKVLDKNDNSPIISFVSVRQGAISEAAPSES
VIALVRVTDKDSGRNGQLQCRVLGNVPFRLQENNDNFYTLLTDRPLDRETKDEYNVTIMA
RDNGIPSLNYTKSFTVKILDENDNAPRFTKVVYVLQVPENNIPGEYLGSVLAHDPDVGRN
GTVTYSIMPSHIGEVSVYTYVSVNPTNGAIYASRSFNYEQTKSFEFKVQAKDGGSPHMES
TATVRVNILDVNDNLPVIILPLLQNDTAEIPVPRNVGIGYIVATVKAVDHDHGDSGHLTY
EITEGNDDHLFDMDPIRGEVRTTHALWEEVSPTVELVVKVTDHGKPPLSAVAKLVIKANT
EAASGGGGGSGVSGEQQHWDVSLPLIVTLCIISVMLLAVMTAIAVKSKHQDKESGNYNCR
MPEYSNPPVGKGKKKRINKSDIMLVQSEMEERDSASRMNVVSSPSLITSPICFDYQSPLP
LTLPRSEVMYLKTTPNSLTVPRAGCHSSFAGLSTDTPANRMSVIQTENFPSEPNYAGSRQ
PFVQSSTFKDAERASLRDSGHGDSDQADSDQDTNRGSQCDTSGREALKMKATSVNGQPFE
QEQDKSVHCTDECRALGHSDRCWMPKLRIGSQADSGDNRTNLFIPVGMDAMVETEIYGTI
SRGSRKTLSTFGKEQRDGTVLVANVKPYLKSQRAPCLPLQESPPAPGSPTKSGPALDSAE
REVKEEREGGSDSSAYGPPDGQCSPLHTALEEPSYLTRELRPKALSSSLIHSAVISQECG
VSEYEQRDSGN
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctctctgttcccatcttccttctgctgtgggttaaagccctgacattgaaaaac
cttagttattccgtcccagaggagcaaggacccggcactgtcataggtaatatcgcgaaa
gacggcggatatgggaccctggagagagggaaaaaatccaacttcagagtgctggagaat
tccgcaccacacctggtggacgtcgacccggagagtggacttattttcaccaaacaaagg
attgacagggagacgttatgcaggcggaacccaaagtgccagctctccatggaggtgttc
gccaatgataaggaaatatgcatgatcaagatcgacatacaggacatcaatgacaacttg
cccagtttcccctcagatcacattaacatcgacatctcggagaatgcagcggcgggaaca
cgcttccctctgactattgcacatgacttggataccggggagaacgggatcaagacttat
caggtcaccagagatgattacaatacattctcgctggatttaaaagtaagaggggacggg
accatttatccagagctggtggttcagcgacctctggatcgggaagaccagagccatcac
accctcctcctcaccgccatcgatgggggggagtatccgagatcaggctccatgcaaatc
aatgtcagggtgactgattcgaatgacaatagccccatttttgagaaatcctcctatgtg
ctggaactgacggagaattccccgcctggaaaaatactcatagatttgaacgccaccgac
catgatgagggaagcaacggacaggtggtttactctttcacgggatatgcatctgagcga
atacaagatttgttctcgatagatcccaatagcggagtcataaaagtccagggggaaatt
gattttgaggagaatcccatcatagaatttgatgtgcaagccaaggatctcgggccgaac
cccataccgggccatgcgaaaattactgtcaaagtgcttgacaaaaatgacaactcacca
ataatcagttttgtttctgtgaggcagggtgccatcagtgaggcggcaccctctgaatct
gtcatcgcgcttgtcagagtgacggataaagattccggacgaaatggccagctccagtgc
cgcgtgctggggaacgttcctttccgactgcaggagaacaatgacaatttttacacgctg
ctcaccgacaggcctttggaccgggagaccaaggacgaatataacgtcacgatcatggcc
agagacaacggaatcccctctttgaactacaccaagtcgttcactgtgaaaatcttggac
gagaacgacaatgcgcctcgcttcacaaaagtcgtttatgtgctacaggtgcccgagaac
aacattccgggcgagtatctgggctccgtgctggcccatgacccggacgtaggccgcaac
ggcactgtaacctactccatcatgccctcgcatatcggcgaggtgtccgtttatacgtac
gtttctgttaaccccacaaatggagccatatacgcatcacgctcttttaactatgagcaa
accaaatcatttgagttcaaagttcaggctaaagacggaggctcccctcacatggagagc
accgccaccgtcagggtcaacatccttgacgtcaacgacaatctcccagtgatcatttta
ccgctccttcaaaatgacacggcggaaatcccagtgcctcggaacgtgggtatcggctac
atcgtggctacggtgaaagcggtggaccacgaccacggagacagtggacacttgacgtac
gagatcacagaggggaatgatgaccacctgtttgacatggatcctataagaggcgaagtt
aggacaacccacgccctgtgggaagaagtctctcccacggttgagctggtggttaaggta
accgaccacggcaaaccgcccttatccgctgtggctaagctggtcatcaaggccaatacg
gaagcggcatcaggtggcggcggcggctctggagtgagcggcgagcagcagcactgggat
gtatccctgcctctcatcgttaccctctgcattatctctgtcatgctcttagccgtcatg
acggccatcgccgtcaagtccaagcatcaagataaagagagcgggaattataactgccgc
atgcccgagtactccaatcctccggtggggaagggcaagaagaagcggatcaacaagagt
gacatcatgctggtgcaaagcgagatggaggagagagattcggcaagccgcatgaatgtg
gtgagcagcccctcgctcataacttcgcctatatgcttcgactaccagagccccctgccg
ctcacgctgcccagatccgaggtcatgtatctgaagacaacaccgaacagcctgacggta
ccgagggcaggctgccactccagctttgccgggctaagcacagacacgccggcaaacagg
atgtcagtgatacagacagaaaacttcccctccgagcccaattatgctggcagcaggcag
ccgtttgttcaaagttctacatttaaggatgcagaacgagcaagcctccgagacagtggc
catggtgatagtgaccaggctgatagtgaccaggatactaatcgaggctcccagtgtgac
acgtctggcagggaggccctcaagatgaaagccacgtcagttaatggtcagcctttcgag
caggaacaagacaaatcagtccactgcaccgatgagtgtcgtgcactgggacactctgac
agatgctggatgccaaagttacggatcggaagccaagcagacagcggcgataatcgcacc
aaccttttcatccccgtgggaatggatgccatggtagagacagagatttatggcaccatc
agccgcggcagtcgcaaaaccctcagtaccttcgggaaggagcagcgggacggcaccgtc
ctcgtggccaacgtcaagccctacttaaagtcgcagcgcgcgccttgcctgcccctgcag
gagagtccgccggcgcccggaagccccaccaagagcgggccggccctggactcggccgag
cgagaggtgaaggaggagcgggaggggggctcagacagcagtgcctacggcccgccggac
ggccagtgctccccgctgcacaccgcgctggaggagccctcctacctgacccgcgagctc
cgccccaaggcgctgtccagcagcctcattcacagtgccgtcatcagccaggagtgcggc
gtgtccgagtacgagcagcgggactcggggaactaa
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