Syngnathus scovelli (Gulf pipefish): 125973621
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Entry
125973621 CDS
T08785
Symbol
si:ch211-199f5.1
Name
(RefSeq) protocadherin-8
KO
K28835
protocadherin-8, delta 2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
125973621 (si:ch211-199f5.1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sscv04515
]
125973621 (si:ch211-199f5.1)
Cell adhesion molecules [BR:
sscv04515
]
Cadherins
Protocadherins
125973621 (si:ch211-199f5.1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Ig_Cad99C_N
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Ig_CLSTN
Arabinose_Iso_C
Motif
Other DBs
NCBI-GeneID:
125973621
NCBI-ProteinID:
XP_049583960
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All DBs
Position
8:11914598..11918556
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AA seq
979 aa
AA seq
DB search
MQFIRSTHYYWWIFVLSFHPFFCASLARTEGNTIRYQCNEEEAAGTVIGNLAKDMSLNPP
HSSRTNFRMMRQFNDSFIRVRESDGQLSVGERMDRERMCRHNPQCLVTFDVVNFSKERYR
LIHVEVEVKDINDNSPEFPSAESVVEISENAAVGSHIPLDPAVDADVGSNYIQSYQISVN
SHFTIDVLLRADGVKYAELVLMKELDREKQASLPLDLTATDGGNPSRSGSTKVTVRVTDF
NDNSPVFDQNSFSVSLPEDAPVGSVILDLNAVDPDEGPNGEVVYGFGKQVSHEIRDLFHV
DSKSGRLTLRSPVDFEDKRTYELDVQATDLGPNPTPSVCKIVIHVSDVNDNAPGISITPM
TSITTGTAHISEAAEKDSLVALVTTSDRDSGVNSQVHCTLYGHDHFKLRQAYEDSYMIVT
AAPLDRERISEYNLTVMAEDFGSPPLRKITQYTIRISDENDNAPHFTKPVYEVSVAENNA
PGAYLATVEATDADLAYNGKITYRLVDSLIMGSPVNTFVSLNSVSGSIYALRSFNYEVMR
QLDVHVQASDGGSPQLQSTAVIRLKIVDQNDNEPSIIEPPLYKGSADVFLPKDAPAGYVV
TQIKATDADEGLNAQLSYKITEGGLLGFSVDKDTGKVHVSRQLTYDLTDNVKVVVSVSDN
GSPSLTSSAIIHFNFIEGTVPSVPSSAQDGDEYLFEWDTSVAVIIILAGSCSLLLLAIIL
ITSICSRRRKETREGYDDREEAPKKAESVESGRVDKLIVGHMGTAFEPHTFPEQPPVAAS
NVAEMTCEDGHQAAGVFEPNNRVVEGKLKGYSTLPGYGKEAVRPITIWKGNSFTTISARD
PHISGKDSGKGDSDFNDSDSDISGDVHKKDSPPTNALWACTSECKVLGHSDRCWSPSATR
PNTSVASGSNLTTFSKTASLPRDTRREHYYPSHVPKGNGLQSVYEKVQHQEFDYILVGPP
TPARIQETDEISIPEYTNS
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttattaggtctactcattactactggtggatatttgtgctctcctttcatccg
tttttctgcgcctctctggctcgaaccgaggggaatacgatccgctaccagtgcaatgag
gaggaggcggcgggcaccgtgatcggaaacctggccaaggacatgtccttgaacccgccc
cactcctccaggaccaattttcgaatgatgaggcagtttaatgactcgttcatccgggtg
agggagagcgacgggcaactgagcgtcggggaacggatggaccgggaaagaatgtgccga
cacaatccacagtgtctcgtcacttttgatgtggtgaatttttccaaagagcgctacaga
ttgatccacgtcgaggtggaggtaaaagacatcaatgacaactctccggagtttcccagc
gccgagtctgtggtggagatttctgaaaacgcagccgtgggctctcatattcctttggac
ccggccgtggacgcggacgtgggctccaactacatccaaagctatcagatttctgtcaac
agtcacttcactattgatgtgctcctgagagcagatggggttaaatatgcagaattggta
ttaatgaaggagcttgacagggagaaacaggcatcgctccctttggatctgacggccaca
gacggcgggaacccatccaggtccggttcgaccaaggtaaccgtccgagtgacggacttt
aacgacaacagtccagtttttgatcaaaatagtttctcggtgagtttgccagaggacgca
ccggtcggcagcgtgatcctggacctgaacgcggtagaccctgacgaaggtccgaatggc
gaggttgtctacggtttcggaaagcaggtttcgcacgagatccgggatctcttccacgtg
gatagcaaatcgggccgcctgaccctcaggagcccggtggactttgaggacaagcgtacg
tacgagctggacgtgcaagccaccgacctgggccccaacccgacgccctcggtttgcaaa
atcgtcattcacgtgagcgacgtcaatgacaacgcaccaggcatcagcatcacccccatg
acctctatcaccacgggcacagcacacataagtgaggcagcggaaaaggacagcctggtg
gccttggtcacaacctcggaccgggactctggggtcaacagccaagtccactgcaccctc
tacggtcacgaccacttcaaactacggcaagcctatgaggacagctacatgatagtgaca
gctgcccccttagaccgcgaaaggatcagcgagtacaacctcacagtcatggccgaggat
ttcgggtcaccccctctcagaaagatcacccagtacaccatccgaatcagcgacgagaac
gacaatgcgccccacttcaccaagcccgtgtacgaggtgtcggtggcggagaacaacgcc
cccggagcctacctcgccaccgtggaggccacagatgccgatttggcctacaacggcaaa
attacctacagactcgtggacagtctgattatggggtcccccgtgaacacctttgtctcg
ctcaattcggtgtcagggtccatctacgccctgcgaagtttcaactacgaggtcatgagg
cagttggacgtgcacgtccaagccagcgacggcggctccccgcagctgcagagcacggcc
gtcatccgtttgaaaatagtcgatcagaacgacaacgagccttctattatcgaaccgcct
ctttacaaaggctctgcggatgtctttctgcctaaagacgcccctgcgggttacgtggtt
acgcagataaaggccacggacgcagacgagggcctgaacgcgcagctgtcctacaaaatc
acagaaggggggctgctgggtttctcagtagacaaagacacagggaaggtgcacgtgagc
cgacagttgacgtacgacctcacggacaatgtcaaagtggtggtgtcagtcagcgacaac
ggctctccttctctgacctccagtgcgatcatacacttcaatttcatcgagggcacagtc
cccagcgtgccctcatccgctcaggacggcgacgagtatctatttgagtgggacacgtcc
gtggccgtcattatcatcctggcggggagctgctccctcctcctgctggctatcattctc
atcacaagcatttgcagccgccgcaggaaagagacgagggagggctacgatgacagggag
gaggcgcccaaaaaggccgagagtgtggagagcggacgcgtggacaagctgatcgtcggt
cacatgggcacagcctttgagccgcacaccttccccgagcagccgcccgtggccgccagc
aatgtggccgagatgacctgcgaggacgggcaccaggcggcgggcgtctttgagcccaac
aacagggtcgtggagggcaaattaaagggctattccactctgcccggctacggcaaggaa
gccgtcagaccaataacaatatggaagggtaattcgttcacaacaatctcagcgagggac
cctcacatcagcggcaaggacagcggcaaaggggacagcgactttaacgacagcgattcc
gacataagcggggatgtgcacaaaaaagactcgccccccacaaacgctctgtgggcgtgc
acgagcgagtgcaaagtgctgggccactcggacagatgctggagcccgtcggccaccagg
cccaataccagcgtggcttccgggtccaacctgacaactttctccaagacggcttcgctt
cctcgggacaccaggagggaacactactatccatcgcacgtgcccaaaggcaacggcctg
caaagcgtgtacgaaaaggttcaacaccaggagtttgattatattctcgtcggcccgccc
acacctgccagaatacaggaaactgacgagatctccattccagagtacacaaactcttaa
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