Syngnathus scovelli (Gulf pipefish): 125973631
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Entry
125973631 CDS
T08785
Symbol
mid1
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125973631 (mid1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sscv04121
]
125973631 (mid1)
Enzymes [BR:
sscv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125973631 (mid1)
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
125973631 (mid1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
zf-B_box
ANCHR-like_BBOX
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_2
zf-C3HC4
PRY
zf-C3HC4_4
zf-RING_2
zf-C3HC4_3
zf-RING_5
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
ZNF512_C2HC
Motif
Other DBs
NCBI-GeneID:
125973631
NCBI-ProteinID:
XP_049583978
LinkDB
All DBs
Position
8:complement(11966686..11989315)
Genome browser
AA seq
669 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCSNCAHRILVSHCTPSEPIQSIRAFQCPTCR
YVINLNQRGLEGLKRNVTLQNIIDRYQKASLSGPNSPSQPRRERATPEGGAMTQPGDRVQ
CQFCEQEPPHEAVKTCVTCEVSYCDDCLKATHPNKKPFTGHRLVEPLLDSHMRGVMCVEH
EDKKVNMYCLTDEQLICALCKLVGRHRDHQVAGLGDRYDKLKHALDTNLSNLIKRTSELE
TLMGKLIQTCQHVEINASRQENKLLEECDLLINIIQQRRQIIGTKIKEGKTVRLRKLAQQ
ISSCKQCVERSASLIAQADHTLKETDPSRFLQSAKSVCERVSMATASSQILLPEINLNDT
FDTFALDFTKEKKMLESLDYLTAPNPPVIREELCTASYDTITVHWTSDDEFTVVSYELQY
AIFTSHTNVVSLCNSADSWMIVPNIKQNHYTVHGLQCGTKYVFIVKAINQAGNRSSEPGK
LKTNSQPFKLDPKSAHRKLRVSHDNLTVERDDTSSKKSHSQDRFSSNSSYGVTGNVYIDS
GRHYWEALIGGSTWFAVGIAYKSAPKHEWVGKNSASWVLSRCNNSWVARHNNKENPLEPS
PHLRRLGVLLDYDSGFLSFYDAVGSQHLHTFDIPFAQPVCPVFNVWNRCLTILTGLPIPD
HLEGSESSN
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggaaacattggagtcagagctgacatgcccaatttgtttggagctctttgaggacccg
cttctcctgccttgcgctcacagcctttgttccaactgcgcccaccgcatcctggtgtcg
cactgcacccccagcgagcccatccagtccatccgcgccttccagtgccccacctgccgc
tatgtcatcaacctcaaccaacgaggcctagagggactcaagcgcaacgtcaccctgcag
aacatcatcgaccgctaccagaaggcttctctcagcggacccaactcgcccagccagccc
cggcgggagcgagcaaccccagaaggcggcgccatgactcagcccggagatcgggtgcag
tgtcagttctgcgagcaggaaccgccccatgaagccgtgaagacctgcgttacctgtgag
gtgtcctactgcgacgactgcctcaaggccacccaccccaacaagaagcctttcacgggc
caccgcctcgtggagcccctgctggactcccacatgcgaggggtcatgtgcgtggagcac
gaggacaaaaaggtcaacatgtactgtttgacggacgagcagttgatttgcgccttgtgc
aagctggtcggacgacacagggaccaccaagtcgccggtctgggagaccgatacgacaaa
ctcaagcatgccttggacaccaaccttagcaatctcatcaagaggaccagtgagttggaa
actctgatgggcaaactcatccagacgtgccaacacgtggagataaatgcatccaggcaa
gaaaacaagctgctggaggagtgtgacctcctgatcaatatcatacagcagagaaggcaa
atcatcggtaccaagataaaagagggaaagacggtgcgcctgaggaagctggcccagcaa
atcagcagctgcaagcaatgcgtcgagaggtccgcttcgctcatcgctcaggccgaccac
actttgaaagagaccgacccctctcgcttccttcagtcagccaaaagtgtctgcgagaga
gtctccatggcaacggcatcctcacagatcttgctaccggaaataaacctgaatgacaca
tttgatacttttgctctagactttacgaaagagaaaaaaatgttagagagtttggattat
ctcacagcgccaaatccgccagtaatccgtgaagaattatgcacggcttcgtacgacacc
atcacggttcactggacgtcagatgacgaattcactgtcgtgtcctacgaactgcagtac
gccatcttcaccagccacaccaatgttgtcagtttgtgcaattccgctgacagctggatg
attgtcccaaacatcaagcaaaatcactacacagtgcacgggctccaatgtggcaccaag
tacgtcttcatcgtcaaagccatcaaccaggccggaaaccgcagcagcgaaccgggcaag
ctcaaaaccaacagtcaaccgttcaagctggatccaaagtccgctcaccgaaaattacgg
gtgtcccacgacaacctgactgtggagagggatgatacgtcgtccaaaaagagtcacagc
caggaccgcttcagcagcaacagcagctacggcgtcaccggcaatgtttacatcgacagc
ggccgccattactgggaggctctcataggaggaagcacatggttcgcagtgggtatcgcc
tacaagtcggcaccaaaacacgagtgggtgggcaagaactcggcctcctgggtactgtcc
cgttgtaacaactcgtgggtggcccgtcacaacaacaaggagaaccccttggagccctcg
ccccaccttcgccgactcggcgtcctgctcgactacgactcgggattcttgtcgttctac
gacgccgtgggctctcaacacttgcacacgtttgacatccccttcgcacagcccgtctgc
cctgtgttcaacgtgtggaaccgatgtctcactatcctcactggactgcccatcccagac
catctagagggaagcgagtcgagcaactga
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