Syngnathus scovelli (Gulf pipefish): 125973798
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Entry
125973798 CDS
T08785
Symbol
nalcn
Name
(RefSeq) sodium leak channel NALCN isoform X1
KO
K21863
sodium leak channel non-selective protein
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125973798 (nalcn)
Ion channels [BR:
sscv04040
]
Voltage-gated cation channels
Sodium leak channel, non-selective
125973798 (nalcn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
PsaF
DUF5914
TraP
FAM165
Motif
Other DBs
NCBI-GeneID:
125973798
NCBI-ProteinID:
XP_049584232
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Position
8:14984872..15027847
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AA seq
1745 aa
AA seq
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MCSAGAISALLFPLIHSLYSTASPSMLKRKQSSRVETQPMTDFGPDETLADSADIFWINK
PWVHTVLRACAIGSVISACMNTPMTFEHYPPLQYVTFTLDTLLIFLYSAEMIAKMHIRGI
LKGDNSYAKDRWCMFDGFMVVFIWVSLALQMFEIADLVDQMSPWGMLRIPRALIMIRAFR
IYFRFELPRSRITNILKRSGEQIWSVSIFLLFFLLLYGILGVQMFGTFNHHCVTNDTEKG
NVTWNSLVIPDTHCSPHGEGYQCPFGFMCKDLEEMGLSRQELGYSGFNELGTSIFTVYEA
ASQEGWVFLMYRAIDSFPRWRSYFYFITLIFFLAWLVKNVFIAVIIETFAEIRVQFQQMW
GSRSSTTSTATTQMFHEDTAGGWQLVAVDVNKPHGRAPACLQQLMRSSVFHMFILSMVAV
DVIVAASNHYKGENHRRHYDEFYMAEVAFTVLFDLEALLKIWCLGFDGYFISSLHKFELL
LVVGTTLHIYPDLYHSQFTYFQVLRVVRLIKISPALEDFVYKIFGPGKKLGSLVVFTASL
LIVMSAISLQMFCFVEELDRFTTFPRAFMSMFQILTQEGWVDVMDQTLVAVGHMWAPVVA
IYFILYHLFATLILLSLFVAVILDNLELDEDLKKLKQLKQSEANADTKEKLPLRLRIFEK
FPNRPQMVKISKLPSDFTVPRIRESFMKQFIDRQQQDPSCLFRRLPSASSSSCDHSKRSA
IEDNKYIDQKLRRSIFSIQARNLLEKETTINKILRACTRQRMLSGSLDGQPAKERSILSV
QHHIRQERRSLRHGSTSQRISRGKSLETLSQDHSSTVRYRNAQREDSEIKMIQEKKEQAE
MKRKVQEEELRENHPYFDKPLFIVGREHRFRNFCRMIVRARFNASKTDPITGVVKNTKYH
QLYDLLGLVTYLDWVMIIVTICSCISMMFESPFTRVMQVPTLQIGEYVFVIFMSIELNLK
IMADGLFFTPTAVIRDFGGVMDIFIYLVSLIFLCWLPHDVPPESGAQLLMMLRCLRPLRI
FKLVPQMRKVVREVLKGFKEIFLVSILLLTLMLVFASFGVQLFAGKLAKCNDPYVHKRND
CHGIFRINVSVSKSLNLKLRPGEKKPGFWVPRVWANPRNFNFDNVGNAMLALFEVLSLKG
WVEVRDVIIHRVGPIHGIYIHVFVFLGCMIGLTLFVGVVIANFNENKGTALLTVDQRRWE
DLKSRLKIAQPLHLPPRPENGGFRAKMYDITQHPFFKRGIAVLVLAQSVLLSVKWDVDDH
VTFPLATMSVVFTLIFVLEVTMKLIAMSPAGYWQSRRNRYDLLVTSLGVIWIVLHFALLN
AYTYMMGTCVIVFRFFTICGKHVTLKMLLLTVVVSMYKSFFIIVGMFLLLLCYAFAGVVL
FGTVKYGENINRHANFSTAGQAITVLFRIVTGEDWNKIMHDCMVQAPFCTPDKHRYWETD
CGNYAGALIYFCSFYVIIAYIMLNLLVAIIVENFSLFYSTEEDQLLSYNDLRHFQIIWNM
VDDKREGVIPTSRVKFLLRLLRGRLEVDLDKDKLLFKHMCYEMERLHSGGDVTFHDVLSM
LSYRSVDIRKSLQLEELLAREQLEYTIEEEVAKQTIRMWLKKCLKRIRAKQQQSCSIIHS
LRESQQQELSRFLNPPSIETTVPSEDHNANNPDNPSQPEMSGLQQLLSPTLSDRGGYRQD
SSDLGKPQRKLGQWRLPAGRTSVKSIVCKMNPVNDEASSGSEVKKWWTRQLTVESDESGD
DLIDI
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
atgtgcagtgctggagcaatttcagctttacttttccctttgatccactctctgtatagc
acggcaagccccagcatgcttaagaggaaacaaagctccagggttgagacccagcccatg
actgactttgggcctgatgagaccctggcagacagtgcggacatcttctggatcaacaaa
ccatgggtacacaccgtgctgagagcctgcgccatcggcagcgtcatctcagcatgcatg
aacacccccatgacatttgagcactacccgcccctccagtatgtgaccttcaccctggat
acgctactcattttcctctactcggctgagatgatcgccaagatgcacatcagaggaatt
ctcaagggggataactcctatgcgaaagatcgctggtgcatgtttgatggattcatggtg
gttttcatctgggtgtccctggcgttgcagatgtttgagatagcagacctcgtggatcag
atgtctccatgggggatgctgagaatccccagagcgctcattatgattcgggccttcagg
atctacttccgctttgagcttcctcgctcccgcatcactaacattcttaagcgttctggc
gaacagatctggagtgtttctatcttcctgctgttttttctcttgctttatggaattctg
ggtgtgcagatgtttggaacattcaatcatcactgtgttaccaatgacacggagaaaggc
aatgtgacgtggaatagtttggtcatcccagacacccactgctcccctcatggtgaaggc
taccagtgtccttttggtttcatgtgtaaggatctggaagaaatgggtctcagcaggcag
gaacttggctacagtggcttcaatgaactgggaacgagcatctttactgtgtacgaggct
gcttctcaggagggttgggtgttcctcatgtaccgagcaattgacagtttccctcgctgg
cggtcttacttctattttatcactctaattttctttctggcatggcttgtgaagaatgtg
ttcattgctgtcatcattgagacctttgctgaaatcagagttcaatttcagcagatgtgg
gggtccaggagtagcaccacatcaacagcgacgacgcagatgtttcacgaagataccgcc
gggggatggcagcttgtagccgtagatgtcaacaaaccacatggccgagcacctgcctgc
cttcagcaactgatgcgatcgtctgtgttccacatgttcatattgagtatggttgcagtt
gatgtgatcgttgctgcgagcaatcattacaaaggcgagaaccaccgcaggcactatgat
gagttttacatggcagaggtggccttcactgttctgtttgacctggaagctcttctgaag
atatggtgtttgggctttgacggctattttatctcctccctgcacaagtttgaattgttg
ctggtggtgggcaccactctgcatatatacccagatctctaccactcccagttcacctat
tttcaggtccttcgagtggtacgtttgataaagatctccccagcattggaagactttgtc
tacaagatatttggaccaggcaaaaaattaggcagccttgtggtgttcacagccagcctc
ctcatcgtcatgtcggccatcagtctgcagatgttctgctttgtggaagagctggaccgc
ttcacaaccttccccagggccttcatgtctatgttccagatcttgacacaagagggatgg
gttgatgtcatggaccagaccctggtcgcagtaggtcacatgtgggctccagtcgtggcc
atttacttcatcctctaccatctctttgctaccttgattctgctcagtctttttgtggca
gtgatattggacaatcttgagttggatgaagacttaaaaaagctcaaacagctcaagcaa
agtgaggcaaatgctgacaccaaagagaagctccctcttcgactcaggatatttgaaaag
ttcccaaacagacctcagatggtgaagatctccaagcttccgtcggacttcaccgtacca
aggatcagggagagcttcatgaagcagttcatcgacaggcagcagcaggaccccagctgt
ttattccgaagactcccctcggcctcgtcgtcctcctgcgaccactccaaacgatctgcc
attgaagacaacaagtatatcgaccaaaagcttcgcaggtcaatatttagcatccaggct
cggaacctgctggaaaaagaaactacaatcaataaaatactacgcgcgtgcacaagacag
cggatgctcagcgggtcattggatgggcagccggccaaagaacgttccatccttagcgtg
caacatcacatacgtcaagagcgcaggtctttgcgacacggctcaaccagtcagaggata
agccgaggaaaatcgctggagacactctcccaggatcattcaagcactgtccgctaccgc
aacgctcagagggaggacagtgagatcaagatgatccaggaaaagaaagaacaagcagag
atgaagcgaaaagtccaggaggaggagcttagggagaaccatccatactttgataagcct
ctcttcattgtaggccgagaacaccgcttcaggaacttctgccggatgatcgttcgagct
cgcttcaatgcatctaaaacggacccaatcacaggagtggtgaagaacacaaaataccat
caactgtacgacctgttgggcctcgtcacctatttggactgggtgatgattatcgtgacc
atctgctcatgcatctcaatgatgtttgaatcaccgttcaccagagtcatgcaagtgccc
accttgcagatcggggaatatgtttttgtcatcttcatgagcattgagctgaatctgaag
atcatggcagatggtctgttcttcacacccacagcggttattcgggactttggaggtgtg
atggacatcttcatctaccttgtgagtctcatttttttgtgctggctgccacatgacgtc
ccgcccgagtctggtgctcaacttttgatgatgctgcgctgcctgcgaccactcaggatc
ttcaaactggtgcctcagatgaggaaggttgtgcgggaggttctcaaaggcttcaaggag
attttcctggtttcgattctactcctcactctaatgctggtgttcgctagctttggagtt
caactgtttgctgggaaactggcgaagtgcaacgacccctatgttcacaaacggaatgac
tgtcacggtatattcaggattaatgtcagtgtttccaaaagtctcaacctgaaactgaga
cctggagagaagaagccaggattttgggttccaagagtctgggccaaccctcgcaacttt
aattttgacaatgtgggaaacgcaatgttggcactgtttgaggtgctgtcactgaaagga
tgggtggaagtcagagatgtgattattcaccgtgttggaccgattcacggcatctacatc
cacgtctttgtcttcctggggtgcatgattggactcactctgtttgttggtgttgtcatt
gccaacttcaacgagaacaaaggcactgctttactgaccgtggatcagagacgatgggag
gatttgaaaagtcgtctcaaaatagcccaacctctccacctacctcctcgtccagagaat
gggggtttccgggccaagatgtatgacatcacacaacaccctttcttcaaacgtggcatt
gctgtgttggtgttggctcaatcagtgctgctctcagtcaagtgggatgtagatgaccat
gtaacatttcctcttgccaccatgtcggtggtcttcactcttatattcgtattggaggta
accatgaagctaattgccatgtctccagccggttactggcagagtcgacggaatcgttac
gacctgctcgtgacgtcgctcggcgtcatttggattgtgcttcactttgctctcctgaat
gcatatacctacatgatgggcacatgtgtgattgtcttcagattcttcacaatatgtggg
aagcacgtgacattgaaaatgctactgttgactgtggtcgtcagcatgtacaagagcttc
ttcatcatcgtggggatgttcctcctgctcctctgctatgcttttgctggcgtcgttctt
tttggcactgtcaagtacggagagaacataaaccgacacgccaacttctccactgcgggc
caagctatcactgttctctttcgcattgttactggcgaggattggaataaaatcatgcac
gactgcatggtgcaggctccattctgtaccccggataaacatcgctattgggagactgac
tgcggcaattatgccggagccctcatctacttctgctccttctacgtcatcatagcctac
atcatgctcaacctccttgttgccatcatcgtggagaacttctccctgttctattccact
gaggaggaccagctgctgagctacaacgacctgagacacttccaaatcatctggaacatg
gtagacgacaagcgggagggtgtgatcccaacatccagggtgaagttcctgctgcgtctg
ctcaggggcaggctggaggtggacctggataaagacaagttgctcttcaagcacatgtgc
tacgagatggagcgactgcacagtggaggagatgtcaccttccatgatgtgctcagcatg
ttgtcctaccgctccgtggacattcgcaagtctctccagctggaggagctgttggccagg
gaacagttggagtacaccattgaggaggaagttgccaagcagaccatacgcatgtggctc
aagaagtgcctaaaacgcattcgtgccaagcagcagcagtcctgtagcatcatccacagc
ctgagagagagccagcagcaggaactgagtcgcttcctcaacccccccagcattgagacc
acggtaccgagcgaagaccacaacgccaacaacccagacaacccctcgcagcctgagatg
agcggcctccagcagttgctcagtcccacgttgtcagacagaggaggctacaggcaggac
tcctccgacctgggcaagccgcagaggaagctgggacagtggcggctgcctgcaggtcgc
accagcgtcaaatccatcgtttgtaagatgaaccctgtcaacgacgaggcctcctcgggg
tcagaggtgaagaagtggtggacccgtcagctgacagtggagagcgacgagagcggcgac
gacctcatcgacatttag
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