Syngnathus scovelli (Gulf pipefish): 125973869
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Entry
125973869 CDS
T08785
Symbol
clasp1a
Name
(RefSeq) CLIP-associating protein 1a isoform X1
KO
K16578
CLIP-associating protein 1/2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sscv03036
]
125973869 (clasp1a)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sscv04812
]
125973869 (clasp1a)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
125973869 (clasp1a)
Cytoskeleton proteins [BR:
sscv04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
125973869 (clasp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
XMAP215_CLASP_TOG
CEP104-like_TOG
HEAT_EF3_N
HEAT
TOR1L1_N
HEAT_EZ
Sec7-like_HUS
Adaptin_N
Vac14_Fab1_bd
Cnd1
RTP1_C1
MMS19_C
MMS19_N
ParcG
Paxt-1_C
HEAT_DAAF5
Motif
Other DBs
NCBI-GeneID:
125973869
NCBI-ProteinID:
XP_049584418
LinkDB
All DBs
Position
8:complement(7163258..7285880)
Genome browser
AA seq
1604 aa
AA seq
DB search
MEYNMESCLAQVLQKDVGRRLQVGQEIIDYIVDKEKSHDLEQDQTALDKMVDGIASSWVN
SSNFKVALLGLDLLSALVTRLQERFRAHVGTALPSLIDRLGDAKDQVREQDQALLLKIME
QAASPQYVWDRMLGGFKHKNNRTREGVCLCLIATLTMYGAQGLTLSKIVPHICNLLGDPT
SQVRDGAMSCLVEIYRHVGERVRMDLSKKGLPQSRLNVIFSKFDEVQRSGNMIPSSGSDK
NFEDEDSVDGGRSSSSSSSKTPSVRRTVMTARRPSSATSAKATGKEAAAGAVDEEDFIKS
FEDVPSVQIYSNRELEDQLTKIREILSDDKHDWEHRVVALKKVRSLMLAGAAEYEGFPQQ
LRLLEAPLKLSAKDLRSQVVREACITLGYLSSLLGNKFDHGAESAMPILLNLVPNSAKIM
ATSGMAAIRLILRHTHYPRLIPIITSNCTSKSVAVRRRCYEFLELMLQEWHTSTLERHVA
VLIETIKKGIHDADSEARSIARKCYWGFHGHYSREAEHLFQALESTYQKALQTHLKSSDS
IVSLPQSDRSSSSSQESLNRPLSVKTVIGGSIARTKLVSTRMPITSGSLQRSRSDIDVNA
ASSAKSRVSTVPASPAFSSAAALPPGSYASLNGTPGKSDGRIRTRRQSSGSASGASPSVV
DSRGRSRAKVVSQSQRSRSANPISAGSRSSSPGKLLGHGSYGRIPRATVSASNTPADKRS
RIPRSQGCSRETSPSRMGLASLCGKKPLLPAALPYRTLARSRIPRPSMSQGCSRDTSRES
SRDTSPARGFTPLASRRHSRSTSALTADPHGQSERYGLIHQARISASVNAMRVLNTGTEV
EAAVADALLLGDSRNKRKPMRRRYESPGMYSDDDANSDASSACSERSYGSRNGGIPHYLR
QTEDVAEVLNHCASSNWSERKEGLLGLQNLLKGQRILSRVELKRLCEIFTRMFADPHSKV
FSMFLETLVDFITVHREDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDITRETFPFD
QQFNILMRFIVDQTQTPNLKVKVAILKYIESLARQMDPTDFINSSETRLAVSRVITWTTE
PKSSDVRKAAQVVLISLFELNTPEFTMLLGALPKTFQDGATKLLHNHLKNSSNASSGVGS
PSNTIGRMTPRNTASRTSPLTSPTNCSHGGMSPSRLWGWGVEGLSKQPPAPTPLPPPNST
SAAPSFRVLRRTHSPSVMEYDTENMNSEDIYSSLRGVTEAIQSFSYRSQEDLNESIRREG
KRDDAAGREGIASTPGSDARLGLDVPEGGRTALDNKTSLLNTPSPRSFSGPRSREFAPYG
HGETICTYDKSALKEAVFDDDVEQFRDCRRKESGENTMVLSVGQDNSDMVADLLKELSNH
NERSEERKGALVELLKITREDSLAVWDEHFKTILLLLLETLGDKDHTIRALALRVLKEIL
KNQPARFKNYAELTIMKTLEAHKDSHKEVVRAAEEAASTLAGSIHPEQCVKVLCPIVQTA
DYPINLAAIKMETKVIERIPKDSLIQLLVDIIPGLLQGYDNTESSVRKASVFCLVAIYSV
IGEELKPHLAQLTGSKMKLLNLYIKRAQTTNSNSSSSSDVSCHS
NT seq
4815 nt
NT seq
+upstream
nt +downstream
nt
atggagtacaacatggagagctgtctagctcaggtcctgcagaaagatgtgggccgtcgt
cttcaggtgggccaagagatcatcgattacatcgtggataaagagaagtctcatgatctg
gaacaggatcagactgcacttgataagatggttgatggcattgccagctcctgggtcaat
tccagcaacttcaaggtggctctgctaggcttggatctcctctctgctttagtgacgaga
ttacaggagagatttagggctcatgttggaacagctctacctagtcttattgatcgattg
ggagatgccaaagaccaagtaagagaacaagaccaagcactgttgcttaagatcatggaa
caagctgcatctccacagtacgtgtgggatcgaatgcttggaggcttcaaacataagaac
aacaggaccagggaaggagtctgcctttgccttattgccacattgaccatgtatggagct
caaggcttgactctcagtaagattgtaccccacatatgtaacttgttgggggatcccaca
agccaggtacgagacggggctatgagttgtttggtggagatctaccgccatgtgggtgag
agagtgaggatggatctcagcaagaagggcttgcctcagtcacgattgaatgtaatcttc
agcaaatttgatgaagttcagagatctgggaacatgatcccctcttcaggctcagataag
aattttgaagatgaagactcagttgatggaggccggtcctcctcttcctcatcctccaaa
acacctagtgtcaggcgaactgtaatgactgctagaagacccagctcagcaacctcagct
aaggccacaggtaaagaagcagctgccggtgccgttgatgaagaggatttcatcaaatct
tttgaagatgtgccctctgtccagatttactctaacagagagctggaagaccaattgacg
aagattagagaaattctgtcagatgacaagcatgactgggagcacagagtggtagcgctg
aaaaaggttcgctcactcatgctggctggcgcagcagaatatgaaggctttcctcagcaa
ctgcgtctgttggaggcaccactcaaattgtcagctaaagatctacgctcacaggtggtc
cgcgaggcctgcatcactctaggttatttatcatcgctgctgggtaacaagtttgaccat
ggagctgagagcgccatgcctatactcctgaaccttgtgcccaacagtgccaaaatcatg
gccacatctggaatggctgctatccgcctcattcttaggcatacacactacccacgtctt
atccccatcattacaagtaactgcacctccaaatcagttgcagtcaggcgacgttgttat
gaatttttagaactgatgctccaagagtggcacactagtacattggaaaggcatgtggct
gttttgattgagaccatcaagaaaggcatacatgatgccgactcagaggccagatccatt
gcaagaaagtgttattggggtttccatggccactatagccgggaagcagagcatctcttc
caagcgctggagtccacatatcaaaaagcacttcagactcatttgaagagctctgacagc
attgtgtctttaccccagtcggatcgttcctcgtcatcttcccaggagagtctgaaccga
ccactctctgtgaagactgtcattggaggcagcatagcgagaactaaactcgtgagtacg
cggatgcccattacatcgggttccctccagcgttcgcgtagcgacatcgatgtaaatgct
gcgtccagcgccaagtcaagagtgtctactgttcctgcgtctccggcattcagctcagca
gctgcccttccacctggatcctatgcatcattaaatggcacccctggtaaaagtgatggt
cgtattcgtaccagaaggcaaagttctggcagtgcaagcggagccagtccttcagtggta
gacagtcgaggtcggagccgggccaaagtggtttctcagtctcagcgatccagatcagcc
aatcccatcagtgctggcagtcgctccagctccccaggcaaactgcttggacacggcagc
tacggtcggatccctcgggcaacagtttctgcctctaacacaccagctgataaacgcagt
aggattcctcgcagccaaggatgcagtcgagagaccagcccaagtcgaatgggcttagcc
agcttgtgtggtaaaaaacctcttctccctgctgctcttccctaccgcacgctagcccgg
agccgcataccccgccccagcatgagtcaaggttgcagtcgcgacactagtcgcgagagc
agccgcgacacaagcccagctcgtggctttactcctctggcttcccgaaggcattcccgt
tcaacaagtgctctcacagctgaccctcatggccagtcagagcgttatggtttgattcac
caagctagaatctcagcgtcagtcaatgcgatgagggttcttaatactggcacggaggtg
gaggcagcagttgctgatgctctgctgttgggagactccaggaataagaggaagccaatg
aggcggaggtacgaatccccagggatgtactccgatgatgatgccaacagcgatgcatcc
agtgcctgctcagaacgctcgtatggttcaagaaatggcggcattccccattatcttcgc
cagactgaggacgtggcggaagtcctgaaccactgtgccagctctaattggtcagagcgc
aaggagggccttctgggattgcagaatctcctcaaaggtcaacgaatactgagccgagtg
gagctgaagagactttgtgaaatcttcacaaggatgtttgcagatccacacagcaaggtg
ttcagcatgttccttgagaccctagtggatttcatcacagtacatcgagaggacttgcag
gactggctgttcgtccttctcacccaattgcttaaaaagatgggggcagacctgctcggc
tcagtccaagccaaagtccaaaaggccttagatatcacaagggagaccttcccatttgac
caacagttcaatattttgatgagattcattgttgatcagacacagacgccaaacctcaag
gtaaaggtggctattttaaaatatattgagtctttggcacgacaaatggacccaactgac
tttatcaactccagtgagactcgcctggctgtatcacgcgttatcacttggaccactgaa
cccaaaagttctgatgtcaggaaggctgcccaggtggtgcttatatcattgtttgagctc
aacacaccagagtttactatgctgctaggagctctgcccaagacctttcaggatggcgcc
accaaattattgcacaaccacctgaagaactccagcaatgcaagtagcggtgtgggttct
ccaagtaacaccattggtcgtatgacacctcgcaacacagccagtcgaaccagcccactg
acctctccaaccaactgctcacacggaggaatgtctccaagtcggttatggggttggggt
gtcgaaggactgtcaaagcaaccccctgcccctactcctcttcctccgcctaactccacc
tctgctgccccttctttcagggtcctgcgcagaacacattcacccagcgtgatggagtat
gacactgagaacatgaactcagaggacatttatagctcactccgtggtgtcactgaggcc
atccaaagctttagctaccgcagccaggaggacctgaatgagtcaatcagacgagagggc
aagcgagatgatgcagccgggagagaaggaatagcttcaacgcctggttcagacgctcgc
ttgggcttggatgtaccagaagggggtcgtactgctttggacaacaaaacttcactgctc
aatacgccatcaccgcgttccttctctgggccaagaagtcgggagtttgctccttacggg
catggtgaaacaatctgcacctacgacaagagtgccctaaaggaggctgtttttgatgat
gacgtggaacagtttcgtgattgccggcgcaaagaaagtggcgaaaatacaatggtgctc
tctgttggtcaggataactctgacatggtcgccgacctgcttaaggaattgtccaatcac
aatgaacgctcagaggaacgtaaaggtgccctggtggagcttctgaagatcacgcgagaa
gacagcctggctgtgtgggatgaacattttaaaactatccttctccttttgctcgaaaca
ctgggtgataaagatcatactatccgagccttggcgctgcgtgtgctgaaagaaatactc
aagaaccaaccagctcggttcaagaattatgcagagcttaccatcatgaagaccctggag
gcccacaaagattctcacaaagaggtggtgcgtgcagctgaggaagctgcatcaacattg
gctgggtccatccatccagaacagtgtgtcaaggtgctgtgtccaattgtgcagacagcc
gattacccaatcaacctggctgccatcaagatggaaaccaaagtcattgaacgcattccc
aaggactcactaatacaactgctggtggacatcatcccgggactcttgcagggctatgac
aacacagagagcagcgttcgcaaagccagcgtgttctgtctggtggctatatactcggta
attggtgaggagctcaaaccccacctggcacagctcaccggcagcaagatgaaattactg
aatctgtacatcaagcgggcccagaccacaaacagcaatagcagcagttcctcagatgtc
tcctgtcacagttaa
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integrated database retrieval system
