Syngnathus scovelli (Gulf pipefish): 125974015
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Entry
125974015 CDS
T08785
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125974015 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sscv03021
]
125974015 (polr1b)
Enzymes [BR:
sscv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125974015 (polr1b)
Transcription machinery [BR:
sscv03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
125974015 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
DUF1186
Motif
Other DBs
NCBI-GeneID:
125974015
NCBI-ProteinID:
XP_049584732
LinkDB
All DBs
Position
10:complement(10324010..10333599)
Genome browser
AA seq
1134 aa
AA seq
DB search
MDALEDWNDVTESPSLKNLTDGSFSVLKERQCDAVQDLVKAHIDSFDQAIGQGLNSVVQA
IPPLEFMVKGERISLAFIEATVHPPTVSKGSVCREMRVFPSECRARRCSYKGKIVADVSW
SVDGVPKGIIKQGLGQIPIMVKSKLCNLHGMAPQQLVQHHEEAEEMGGYFIVNGIEKVIR
MLIMPRRNYPIAVSRAKWKSRGNGYTQYGLSMRCMKENHTAINMHLHYLENGTIMLNFIH
QKELFFLPIGFMLKALVDLSDLEIFSELIKGMEENSLYRSAACEMLRLVSTQGCTSRSKV
LDYLGGRFRVKLNLPEWYTDRQCADFLLDECICIHLRTGMEKFRLLCLMCRKLFSFAKQE
SLEENPDGIACQEVLTPGQLYLMFLKEKMWMWLLSVKAAVEKRVSHLKGGWTAENLIKMF
NLGTDLSKPFEYMLATGNLSSKTGLGMLQNTGLCVVADKLNFIRYLSHFRCVHRGAAFTK
MRTTSVRKLLPESWGFLCPVHTPDGEPCGLMNHMTASCQVVTASSSTVGLPAILCSLGVT
PVDATPTSTFADCYPVLLDGAVVGWVEERLAPGVVDSLRRFKVLQEKKVPPWTEIILVPK
TGKASLYPGLFLFTTPCRMMRPVRNLAVGKQELIGTFEQLYVNVAVKEAEVEAGVSSHQE
LFPHSMLSVVASFIPYSDHNQSPRNMYQCQMGKQTMGFPLHAFLERSDNKLYRLQTPQSA
LVRPSMYDHYQLDNYPSGTNAVVAVISYSGYDMEDAMIVNKSSWERGFAHGCIYKTELVD
LAQKARGHDGVVFGAKPGDPKVNNQLDADGLPPVGAMLRYGDPFYSYINMNTGQSFVTFY
KSQEACVVDNIKICGNDVGTGLFKRVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAED
MPFSESGLSPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLSHDATPFTFSEDNSALDY
FGEMLRAGGYNYYGTERLYSGTSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKV
TNQPVGGRNVQGGIRFGEMERDALLSHGSSFLLQDRLFNCSDRSVAQVCVDCGSLLSPLL
EKPPPSWSSTRHRRTVCTLCGKSDSVDSVSVPYVFRYFVAELAAMNIKVKLDIK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggacgccttggaggactggaacgacgtgaccgaaagtccgagtttgaagaacctcacg
gatggaagcttcagtgtactaaaagagagacaatgtgacgctgtacaggatttggtcaaa
gcgcatattgactcttttgatcaggccatcggacaaggactcaactccgttgtgcaggcc
atcccgccgttggagttcatggtgaagggagagcgcatcagtttggcgttcatagaggcc
accgtccacccgccgaccgtgtccaaaggcagcgtgtgccgcgagatgagagtcttcccg
tcggagtgccgcgccaggaggtgctcgtacaagggcaagatagtggcagatgtgagctgg
agtgtagatggggtccccaaagggatcatcaagcaggggctcgggcaaattcccattatg
gtcaagtccaagctgtgcaacctgcacgggatggcgccgcagcagctggtgcaacaccac
gaggaggctgaggaaatgggcggctacttcattgtgaacggcattgagaaggtgattcgc
atgctgatcatgcctcggaggaactaccccattgctgtgtcacgagccaagtggaagagc
agaggcaatggatacacgcagtatggtttgtccatgcgctgcatgaaggagaatcacaca
gccatcaacatgcaccttcactacttggagaacggaaccatcatgctcaacttcatccac
cagaaagaactcttcttcctacccattggctttatgcttaaggcgctggtggacctgagc
gacctggagattttctcagagctgatcaaaggcatggaagagaactcgctgtaccgcagc
gccgcctgcgagatgctgcgcttggtgtcgacgcagggctgcacgtcacgctccaaggtc
ctggactacctgggcggacgcttccgcgtgaaactcaacctgcccgagtggtacaccgac
cggcagtgcgccgacttcctgctggacgagtgcatctgcatccacttgcggacaggcatg
gagaagttccggctgctgtgcctgatgtgtcgcaagcttttcagcttcgccaagcaggag
agcctggaggagaacccagacggcatcgcctgccaggaggtcctcacgccgggacagctc
tacctcatgttcctcaaggagaagatgtggatgtggctgctgtcggtcaaggcggcggtg
gagaagcgagtaagtcacctgaagggtggctggacggcggaaaatctcatcaagatgttc
aatcttggaaccgacctcagcaaaccctttgagtacatgctggctaccggcaacctcagc
tccaagacgggtctgggcatgttgcagaacacgggcttgtgcgtggtagccgacaagctc
aacttcatccgctacttgtcgcacttccgctgcgtgcaccgcggcgctgccttcaccaag
atgcgcaccacgtctgtgcgcaagttgctgcccgagtcctggggcttcctgtgccctgtg
cacacgcccgacggcgagccctgcggcctcatgaatcacatgacggccagctgccaggtg
gtgacggcatcctcgtccaccgtggggctgccggccatactctgctcgctgggtgtgacc
cccgtcgatgccacccccaccagcaccttcgccgactgctacccggtcctgctggacggc
gctgtggtgggttgggtggaggaacgcctggcccccggtgtggtggactcactgcgcagg
ttcaaggttctgcaggagaaaaaagttcctccctggactgagatcattctggtgcccaag
acgggcaaagccagcttgtacccgggcttgtttctgttcaccacgccgtgccgcatgatg
cgccctgtgcgcaacctggcggtcggcaagcaggagctcattggaaccttcgagcagctt
tatgtcaacgtggccgtgaaggaggcagaggtggaggcgggtgtcagcagccaccaggag
ctcttcccacacagcatgctcagcgtggtggcaagcttcataccctattcagaccacaac
cagagtcccaggaacatgtaccagtgccagatgggtaagcagacgatgggctttcccctt
cacgccttcctggagcgttcggacaacaagctgtaccggctgcagacaccgcagagcgca
ctggtacgtccttccatgtacgaccactaccagctggacaactaccccagtggcaccaac
gccgtggtggctgtcatctcctacagcggctacgacatggaggacgccatgattgtgaac
aagtcatcatgggagcgcggctttgcccacggctgcatctacaagacggaactggtggac
ttggcccaaaaggcacggggccatgacggcgtggtgtttggggccaagcctggagacccc
aaggtcaataatcagctcgacgctgatggacttccgccggtgggcgccatgctgcgctac
ggcgaccccttctacagctacatcaacatgaacaccggccagtcctttgtcactttctac
aagagccaggaggcgtgcgtggtggacaacatcaagatctgcggcaacgacgttggcacg
ggcttgttcaagcgcgtgtgcatcaccatgcgggtgccacgcaatcccaccatcggcgac
aagttcgccagccgtcacggccagaagggcattctgagccggctgtggcccgccgaggac
atgcccttcagtgagagcggcctcagccctgacatcttgttcaacccgcacggattcccc
tcgcgcatgaccatcggcatgctgatagagagcatggcgggcaagtcggctgccctgcat
ggcctgagccacgacgccacgcccttcaccttctctgaagacaactctgcgctcgactac
ttcggggagatgctgcgggcaggcggctacaactattatggcaccgagcgcctctacagt
ggcaccagcggcctggagctagaggccgacattttcatcggcgtggtttactaccagagg
ctcagacacatggtgtccgacaagttccaggtacgtacgacaggggcgcgtgacaaggtc
accaaccagcctgtgggcggtaggaacgtgcaaggcggcatccgcttcggcgagatggag
cgtgacgcattgctatcgcacggctcgtccttcctgctgcaggaccgcctcttcaactgc
tccgaccgttcggtggcgcaggtgtgcgtggactgcgggagtttgctgtcgccgctgtta
gagaagccgccgccctcctggtcatccacgcgccaccgtcgcactgtctgcacactctgt
ggcaagagtgactcggtggactcggtctccgtgccatacgttttccgctactttgtggcc
gagctggccgccatgaacatcaaagtcaagctggacatcaagtga
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integrated database retrieval system
