Syngnathus scovelli (Gulf pipefish): 125974020 Help Entry 125974020         CDS       T08785                                  Symbol col4a1 Name (RefSeq) collagen alpha-1(IV) chain   KO K06237   collagen type IV alpha Organism sscv  Syngnathus scovelli (Gulf pipefish) Pathway sscv04382   Cornified envelope formation sscv04510   Focal adhesion sscv04512   ECM-receptor interaction sscv04518   Integrin signaling sscv04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:sscv00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     125974020 (col4a1)    04518 Integrin signaling     125974020 (col4a1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     125974020 (col4a1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     125974020 (col4a1)  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     125974020 (col4a1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:sscv04147]     125974020 (col4a1)    00536 Glycosaminoglycan binding proteins [BR:sscv00536]     125974020 (col4a1) Exosome [BR:sscv04147]  Exosomal proteins   Exosomal proteins of other cancer cells    125974020 (col4a1) Glycosaminoglycan binding proteins [BR:sscv00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    125974020 (col4a1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  125974020 NCBI-ProteinID:  XP_049584735 LinkDB All DBs Position 8:complement(12938867..12964050) Genome browser AA seq 1639 aa AA seqDB search MLLPAASILLLLAVSSSVDHATAEGCGTSCGKCDCSGVKGAKGERGLPGLQGNMGFPGMQ GHEGPVGPMGPKGDPGQFGAPGIKGVRGPPGLPGFPGNPGLPGINGNDGPPGIAGVPGCN GTKGERGRDGVPGFDGIQGTPGVPGIPGIKGDPGGVIGFIPLKGDRGFPGTPGLPGSHGP PGPIGPPGPRGYVGPKGDAGPPGPPGEKDDKLSFEGEKGDKGERGFRGPPGAPGPPSPGV EGPGTEFIGPPGNRGDPGQKGEQGYCNISRTGVKGEPGPPGPIGKPGKEGDEGRKGEKGF PGNYGYPGPQGEKGERGPPGYASGAPGPAGPRGLPGLQGEKGFPGPQGEAGPPGRYLEGP RGETGQKGDAGQKGDRGIEGESLAGPPGQPGLVGPPGPPGLPVDPNECTNAKGSLGPPGP PGLQGELGQKGDKGDTCVLCEGFGPPGLPGPQGHKGEQGPPGPVGGKGDKGNPGFPGNPG RPGINGIPGLIGAPGPVGEPGDIFIAPGLKGDRGYPGPGGSPGQPGLDGIPGRDGLPGVP GPKGEPGKGGIKGDQGSIGDPGLTGPPGERGPPGLPGFGRPGVPGDKGSQGRAGIPGSPG TPGVKGEPGQGVSTPGPQGVPGPRGEPGRDGPQGPAGLQGDSGIPGFPGQKGDQGPPGIG FPGPTGAKGISGIPGAPGLPGESGRPGQDGSPGQPGLQGQKGEPGMGLPGQKGSQGPPGI IGFPGEKGNPGLPGIPGQEGLTGPPGPQGIKGNIGHPGPAGVVGLPGAPGKGLPGAPGPQ GQQGEPGPFGRVGEKGERGYPGPPGIGMPGPQGEKGLSGFPGAPGEKGLPGVPGLPGRDG PIGNQGTKGEMGVMGTPGLPGFPGPPGFPGNQGSRGDPGVPGVRGQSGETGLKGERGETG LQGPPGNMSKVDMEHMKGEKGDLGDPGNPGLSGQKGFRGLPGDPGMPGKDGNPGLPGQPG QKGDAGVPGEPGYMGPPGQKGSAGEMGIPGPIGPKGLKGDIGTPGHPGFKGTDGVKGDRG TPGEPGIGLPGFPGERGQPGQPGFPGSRGEKGLKGQMGTPGMPGVQGAKGDKGIFGTPGQ PGIPGEKGVPGLQGSAGEPGRDGRPGESGLPGPPGPAGDKGEAGVDGIPGSSGERGDPGI PGLSIPGPPGELGSKGEKGSLGFPGSPGYPGVPGVKGDKGLPGFQGRQGEPGEIGPPGFS LEGPKGNQGEPGQPGEPGIVGTPGPSGVPGRDGQKGEKGDHGLPGFQGELGQKGDPGSPG FPGPAGLPGVHGPKGERGQQGVPGFPGTKGTQGDFGFKGELGDRGFQGEKGNVGLPGPPG PHTIIKGDIGQQGVPGLPGPQGPTGFPGQKGQQGLTGTPGPKGEDGLPGYHGQPGSKGDS GLPGPQGPRGFPGPPGPDGVPGQVGPPGPSSMDHGFLVTRHSQTVEIPVCPEGTSPIYDG YSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPMP MSMAPITGESIKPFISRCAVCEAPAMVIAVHSQTIMIPPCPHGWDSLWIGYSFVMHTSAG AEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDSEMFTKPVPTTL KAGNLRTHISRCQVCMKRT NT seq 4920 nt NT seq  +upstreamnt  +downstreamnt atgctgctccccgctgcctcaatcctgctcctgctggctgtctcgtcaagcgtggaccat gccacggctgagggctgtgggacatcatgtggaaaatgtgactgcagtggtgtgaaggga gccaagggtgagcgtggtctccctggtcttcaaggtaacatgggattccctggaatgcag ggacacgaggggccagtcgggccaatggggcccaagggagatccaggacagtttggcgct cctggaataaaaggagtccggggtcctcctggtcttccaggtttcccaggaaatccagga ttacctggaatcaatggaaatgatggtccacccggtattgcaggtgtcccaggatgcaac gggactaaaggagaaagaggaagagatggtgtccctggttttgatggtattcaaggaact cccggcgtcccagggattccaggaattaagggtgatccaggtggtgtgatcggattcatt ccccttaaaggcgacagaggcttcccaggcacacctggacttcctggatctcatggacca cctgggccgattggtcctcctggacctcggggttatgtcggacctaaaggtgatgctgga ccaccaggcccccctggagaaaaagatgacaagctctcctttgaaggcgagaaaggagat aagggcgagcggggcttcagaggcccacccggcgctcctggacccccttcaccgggcgtg gaaggccctggcacagagtttatcggaccaccgggaaacagaggagatccaggccagaaa ggagaacaaggctattgcaatatatctcgaactggagtaaagggtgagccagggccaccg ggaccaataggcaaacctggcaaggagggagatgaagggcgaaagggagaaaagggcttt cccggaaattacggataccctggacctcagggtgaaaaaggagaaagagggcctcctgga tatgcaagtggtgcccctggtccagctggtcctcgtggcctccctgggttacaaggagaa aaaggttttcctggacctcaaggagaagcaggcccaccagggcgctatcttgaaggacct cgtggagagaccggccaaaagggggatgcgggtcagaaaggagacaggggtattgaagga gagtctctagccggacccccagggcaaccgggcctagtgggacccccggggcctccagga ttacctgttgaccctaatgaatgcaccaatgcaaaaggctcccttggcccacctggacct ccagggcttcaaggagagttgggacaaaaaggtgacaaaggagacacttgcgtcctgtgt gaagggtttggacctccgggtttacctggcccccaaggccataaaggggagcaaggacct cctggtcctgtaggaggcaagggagacaagggtaatcctgggttcccaggaaatcctgga agacctggcatcaatggcattcctggtttgattggggcccctggtcctgttggagagcca ggagacatattcattgcaccgggtctgaaaggagacagaggctaccctggtcctggtggt tcacctggacaaccaggtctggatgggattccagggagggatggcctacctggtgttcct ggaccgaaaggagaacctggcaaagggggcatcaaaggtgatcaaggatcaattggggac cctggtcttacaggtccccctggagagaggggtcctccaggtctgccaggcttcgggcgc cctggggtgcctggagataaggggagtcaggggagagctggcatccctggatcacctgga acacccggtgtgaaaggggagccaggtcaaggtgtgagcactcccggaccacagggtgtc cctgggccacgaggagaacctggcagagatggccctcaaggtccagcaggtctccaagga gactcaggaataccaggttttcctggacagaaaggtgatcaaggaccaccaggaattgga tttccagggccaactggtgcaaaaggaatcagtggaatcccaggtgctccaggattgcca ggagagtccgggagaccgggacaggatggttctcctggacaacctggtctacaaggacaa aaaggtgaaccaggaatggggctcccgggccaaaaaggttcacagggtcctccgggaatt attgggttccctggagagaaaggtaacccaggattaccaggtattcctgggcaagaaggc ctcacaggaccgccaggacctcagggaataaaaggtaacattggacaccctggacctgct ggagtggtagggttaccaggtgctccaggaaagggtttgccaggagctccaggaccacaa ggacaacaaggagagcccggtccatttggtagggtgggtgaaaaaggagagaggggctat ccaggacctcctggcattggcatgccagggcctcaaggagaaaaaggactttccgggttc ccaggagcccccggtgaaaaaggtttgccaggagtaccaggcctaccaggaagggatgga ccgattggaaatcaaggtacaaaaggcgaaatgggggtcatgggtactccgggattgcca ggatttcccggaccacccggtttccctggaaatcaaggctcgagaggtgatcctggtgtt cctggtgtgcgtggacaaagcggagagactggacttaaaggagagaggggagaaactggt cttcaaggccctcctgggaacatgagtaaagtcgacatggagcacatgaaaggggagaag ggagacctaggagatccaggaaatcctggtttatcaggacagaaaggctttcgcggacta cctggagaccctggaatgccaggaaaagatggaaaccctggtttacctggacaaccaggt cagaaaggagatgctggtgttcctggagaacctggctatatgggcccacctgggcagaag gggagtgcaggtgaaatgggaataccaggtccaattggtccaaagggtcttaaaggagac ataggtactccgggtcatcctggtttcaaaggaacggatggagtgaaaggagaccgcgga acacctggagagccaggcattgggctcccaggatttccaggagaaaggggacaacctgga caaccaggattcccaggatcgcgaggagagaagggtctgaagggtcaaatgggaacgcct ggcatgccaggagttcagggagctaaaggagacaaaggaatatttggcactccaggtcag ccaggaatacccggtgagaagggggtcccagggttacaagggtctgcaggagaacccgga cgtgatggtcgaccaggtgagagtggcttgccaggacctcctggtccagctggagataaa ggagaagcgggagttgatggtatccctggatcttcgggggagagaggagaccctggtata cctggtcttagtattccaggacccccaggggaactaggtagcaaaggtgaaaaaggtagt ctgggcttccccggcagcccaggctatcctggagtgcctggtgtcaagggtgacaaagga cttcccggctttcaggggcgtcaaggtgagccaggagaaattggccccccgggattctct ctagagggacctaaaggaaatcagggagaaccaggacaacctggagaaccaggaatcgtt ggcacaccgggaccttctggtgtaccaggacgagatggccaaaagggagaaaaaggagac catggtcttcctggtttccagggagagttagggcaaaagggtgaccctggatcacctgga tttcctgggccagctggtcttccaggtgttcacggccccaaaggggagaggggacaacag ggggtacccggtttcccaggtacaaagggtactcaaggcgattttggattcaaaggagaa cttggggatagaggattccaaggggaaaagggtaatgttggcctgcctggtccccctggt ccacacaccatcatcaaaggagacattggtcaacagggtgtcccgggcttaccaggacca caaggaccaactggattcccaggccagaagggacagcaaggtctgacaggtactccaggg ccaaaaggagaagatggcctccctggttatcacggtcagccaggatccaaaggcgactct ggtttgcctgggcctcaaggacctagagggtttcctggccctccaggacctgatggtgtt cctgggcaagtgggaccacccggcccctcctctatggatcacggtttcctggtaactcgg cacagccaaacagtggagattccagtttgtcctgagggcacctcacccatatatgatggc tactcgttgctctacgtccaaggcaatgaacgctcccatgggcaggatcttggtacggcc ggaagctgtctgagaaagttcagccccatgcccttcttgttttgcaacatcaacaacgtc tgtaacttcgcctcgcgtaatgactactcatactggctcacttcgcctgagcccatgccc atgagtatggcgccaattaccggcgaaagcatcaaacccttcatcagcaggtgtgcagtg tgtgaagctccagccatggtgattgcagttcacagtcagaccattatgatccctccatgt cctcatggttgggactctctgtggatcggatattcttttgtaatgcacactagcgcaggt gctgagggttcaggtcaagctctggcctctcccggttcctgcttggaggagttccgaagc gctccgttcattgagtgtcacggtcgaggaacctgtaactattacgccaactcctacagc ttctggcttgcgacaattgaagacagcgagatgtttacgaaacccgtcccaacgacgcta aaagcgggaaatctgcgaacacacataagccgctgtcaggtgtgcatgaagaggacataa

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