Syngnathus scovelli (Gulf pipefish): 125974045
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Entry
125974045 CDS
T08785
Symbol
ddx10
Name
(RefSeq) probable ATP-dependent RNA helicase DDX10
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sscv03009
]
125974045 (ddx10)
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125974045 (ddx10)
Ribosome biogenesis [BR:
sscv03009
]
Eukaryotic type
90S particles
Helicases
125974045 (ddx10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Motif
Other DBs
NCBI-GeneID:
125974045
NCBI-ProteinID:
XP_049584787
LinkDB
All DBs
Position
10:complement(10245306..10248249)
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AA seq
795 aa
AA seq
DB search
MDDTSDPIKDFEQWKKKYNLKKARVKRERIKKKPEWQVEQEKIDRLVSRYGDIDSKEVIK
FSDFPISKKTLLALQKHQYRQPTEIQRQTIGFALQGKDVLGAAKTGSGKTLAFLIPVLEC
LYRQQWSSVDGLGALIISPTRELAYQTFEVLRKVGKNHEFSAGLIIGGKDLKGESEKIHR
TNIVICTPGRLLQHMDETPDFHVTDLCMLVLDEADRILDMGFASTLNAIVENLPVGRQTL
LFSATQTKSVKDLARLSLKEPEYVWVHEKAKFSTPATLEQSYVVCELHDKVNMLYSFIRS
HLKKKIIVFFACCKEVQYLFRIFCRLRPGIPVLALHGKQQQMKRVEVYNDFLRKNNAVLF
ATDIAARGLDFPAVNWVLQYDCPEDADTYIHRVGRTARYKEGGEALLLLMPSEEMGMIAQ
LQEKKVPVNKIQVNPEKLQNVQQKLEAFLAQEHEQKQRAQRCFVSYLRSVFLMRNKDVFD
VFKLRLHKYAVSLGLAMAPRVRFLDKAEAGRTAEKRGEDEELSSFKAQLRGDFPHQEESE
DDSDNEDQAKAPFLDADDDDLREIDFLTVKRKDVFKNEEEHQTQVDEPIKKAPQKVSKYK
EAKKILKRNFKVNTKVSFTEEGEAIQVWPPVQSLATSQDGAQEEDDVSGINVEKAKERLR
REDREFDKQEYSRKVKAKHREKRLKAKAARKEASKQHADKSEDDSDEVVAYLASGSEEEF
DPSTLPDPDRRCDDTEDEDRQVKRSYSSSEEDEAPRRGGKKARQQQQEEEHASLDTGLSL
AEDEELVLRLLSGRT
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atggacgacacgtcggatccaatcaaagacttcgaacaatggaaaaagaaatacaacttg
aagaaagctcgcgtcaagcgtgaacgaatcaagaagaagccggagtggcaggtcgagcaa
gagaagatcgaccggctggtgagcaggtacggcgacatcgacagcaaggaagtcatcaag
ttctccgacttcccaatttccaagaaaaccctcctagccctccagaagcaccagtacagg
cagcccactgagatccagaggcagacgatcggcttcgcgctgcaggggaaggacgtgctg
ggagccgccaagaccggatctggaaagactttagccttcctcatcccggtgctggaatgt
ctgtaccgccagcagtggagctccgtggacggcctgggcgccctcatcatctctcccacc
agggagctggcctaccagaccttcgaggtgctccgcaaggtgggcaagaaccacgagttc
tcggcgggcctgatcatcggcggaaaggacctgaagggcgagtctgagaagatccaccgc
accaacatcgttatctgcacgccaggcaggctgctgcagcacatggatgagacgcctgac
ttccacgtgaccgacctgtgcatgctggtgctggatgaagccgatcgcatcctggacatg
gggttcgccagcacgctcaacgccatcgtggagaacctccccgtcggccggcagacgctt
ttgttctccgccacgcagaccaagtcagtcaaagacctggcgcgacttagcctcaaggag
ccagagtacgtgtgggtgcatgagaaggccaagttcagcacgccggccacgctggagcag
agctacgtagtatgtgagctccatgacaaggtcaacatgctctactccttcatccgaagt
cacctgaagaagaagatcatagtattctttgcctgctgcaaggaggtgcagtacttgttt
cgcattttctgccgcttgcggccgggcatccccgtgttggcgttgcacggcaagcagcag
cagatgaagcgggtggaggtctacaacgacttcctgcgaaagaataacgccgtgctcttt
gccacggacatcgccgcgagggggctggacttccccgccgtcaactgggtgctgcagtac
gactgccccgaggacgcagacacctacatccacagggtgggccgcacggccaggtacaag
gagggcggcgaggccttgctgctgttgatgccctccgaggagatgggcatgattgcccag
ctgcaagagaagaaggtgcccgtcaacaagatccaggtgaatccagaaaagctccagaat
gttcagcagaagctggaggccttcctggctcaggagcacgagcagaagcagcgcgcccag
cgctgctttgtctcttacttgcgctccgtcttcctgatgaggaacaaggacgtgtttgac
gtcttcaagttgcggttgcacaagtacgcggtgtccttgggcctggccatggcgccgcgg
gtgcgcttcctcgacaaagctgaggcagggagaacggccgaaaagcgaggggaagacgag
gaactgagcagcttcaaagctcaattaagaggcgattttcctcaccaagaggaatctgaa
gatgacagtgataatgaagatcaggccaaagcgcccttcctggatgccgacgatgacgac
ctgagagagatagacttcctcacagtcaaacgaaaggatgtcttcaagaatgaggaagaa
caccagacccaggtggatgagcccatcaagaaggcgccccaaaaagtgtccaagtacaaa
gaggccaagaagatcctcaaaaggaacttcaaagtcaacactaaagtctccttcaccgag
gaaggggaagccatccaggtttggcctcccgtgcagagcttggccaccagccaggatggg
gcacaggaggaagacgacgtgtcggggatcaacgtggagaaggccaaggagcggctgagg
agggaggaccgggagtttgacaagcaggagtatagccgcaaggtgaaggccaaacaccgc
gagaagaggctaaaggccaaagcggccaggaaggaggccagcaagcagcacgcagacaag
tcggaggatgacagtgacgaggtggtggcatatctggccagcggcagcgaggaggagttt
gaccccagcacgctgccggaccccgacagacgatgtgatgacaccgaggatgaagacaga
caagttaaacgcagctatagcagcagtgaggaagatgaggcaccacggcggggcgggaag
aaggcaaggcagcagcagcaagaggaggaacacgcatcgctggacacgggcctgtcgctg
gccgaggacgaggagctggtcctgcggctgctctcgggacgcacgtga
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