Syngnathus scovelli (Gulf pipefish): 125974073
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Entry
125974073 CDS
T08785
Symbol
lcmt2
Name
(RefSeq) tRNA wybutosine-synthesizing protein 4
KO
K15451
tRNA wybutosine-synthesizing protein 4 [EC:
2.1.1.290
2.3.1.231
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sscv03016
]
125974073 (lcmt2)
Enzymes [BR:
sscv01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.290 tRNAPhe [7-(3-amino-3-carboxypropyl)wyosine37-O]-methyltransferase
125974073 (lcmt2)
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.231 tRNAPhe {7-[3-amino-3-(methoxycarbonyl)propyl]wyosine37-N}-methoxycarbonyltransferase
125974073 (lcmt2)
Transfer RNA biogenesis [BR:
sscv03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
125974073 (lcmt2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_KLHDC2_KLHL20_DRC7
LCM
Beta-prop_ATRN-LZTR1
Kelch_4
Kelch_5
Kelch_6
Kelch_3
Kelch_1
Kelch_2
NANM
Motif
Other DBs
NCBI-GeneID:
125974073
NCBI-ProteinID:
XP_049584864
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Position
8:complement(14062568..14073350)
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AA seq
671 aa
AA seq
DB search
MTNGKKQKGSDTAVQGTNDSSVVSKVSAAAQGYFHDCFQQHFVCKVARRSPLINRGYYVR
WRAVDHCVRNFLQVTQHCAKRQILSLGAGFDSLYFRLYGDAALNKAVVFEVDFPDVTRRK
AALIQSNVSLLQMLDSHHVLSLTGPLFVSSSQYFLLGVDVRHDSHVEETLVKAGLDPTAP
TLILSEVVLTYMETQRSDDIISWAARFLPQALFVMYEQIHPQDPFGRIMQEHFSKLNSTL
HALRQYPDIDAQKQRFLDKGWEQCVCLDMNEFFLRLIPDDERHRVESLEPFDEYEEWHQK
CSHYFILTASRGSLTAQSLLIHPEVLFQCPSWSATDLTVKMEPVCVEGFGMASTLLIGGH
ILLTGGSCRTGRGAQSRVLHRGPEGWKSFHVKPSTHSSVRLYHSVTSISGRVAVMYGGRA
SPVNPIGGLVKVNFKYESSPGPEDVLEVHEEQMTCTGAHPPPRWRHSATLVSHKGKDFLF
IFGGKNESATVLGDGYFLNLDQQHWTEVAVEGAAPEARHSHSACSYQGGLVLFGGHGKRG
EPLGDIVVMKPNERGFCWETIDVQPPPCPRYSHGAHVIGDRLIVVGGVWLHSDSVPGVAV
IDLSRRCSTEFHLLTSSVPRPLMLHSFCSELVVQKEAQLILIGGGGNCFSFGTHFNPQLV
SVDLGPALMGT
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgactaacgggaagaagcagaagggttcggacacagcggtgcaagggaccaatgacagc
agcgtggtgagcaaagtgtctgctgcagcccagggctacttccacgattgctttcagcag
cacttcgtgtgcaaagtggcgaggagatcgccactcatcaacaggggttactatgtgcgc
tggagggcagtggaccactgtgtgcggaacttcctgcaagtcacacaacattgtgccaag
agacaaattttgtctttgggtgccggcttcgactcgctatatttccgcctgtacggagac
gcggcactcaacaaggcagtcgtgtttgaagtcgatttcccagacgtgactcggcgaaag
gcggctctgatccagtccaatgtgtcgttgttgcaaatgttggactcccaccatgtactt
tctttgacagggcctttgttcgtgtcgagcagtcagtacttcctgctaggagtggatgtg
agacatgattcccatgtagaagaaactctggtaaaggcgggactggacccgactgctcct
actctgattctttccgaagtggtgctcacctacatggaaacacaacggtccgatgacatc
attagttgggcggcgcggttcttaccccaggctctctttgtgatgtacgagcagatccat
ccccaagatccatttggtcgcatcatgcaggagcatttctcgaaactgaattccactctg
catgcgcttcgacaatatcctgacattgacgcacaaaagcagagatttcttgacaaggga
tgggagcagtgtgtgtgtttggatatgaacgagttcttcctcaggctaattccagatgat
gagagacaccgagtggaaagtttggaaccttttgatgagtacgaggaatggcaccagaaa
tgctcgcactacttcatcctcactgcatctcgaggttctctcacagcgcagtctctgcta
atccatcctgaagtgctattccagtgtccatcttggagcgccactgacctcactgtgaaa
atggaaccagtttgcgtggagggcttcgggatggcctcgacgttgttgattggaggacac
atcctgctcaccggaggctcctgcaggaccggccgaggggctcagagtcgagtcctgcac
cgaggccctgaaggatggaaatcattccatgtcaaaccatcaacccattcgagtgttcga
ctctaccatagcgttacttctatttctgggagagtcgctgttatgtacggagggcgcgct
tctcccgtcaacccgatcggaggccttgtcaaagtcaacttcaaatatgaaagttcacca
ggtcctgaggatgtacttgaagtccatgaggagcagatgacgtgtacaggtgctcatcca
ccgcctagatggagacactctgccactctagtctctcataaagggaaagacttcttgttc
atctttggtggaaaaaatgagtccgcaacagttttgggtgatggctatttcctgaatctg
gatcagcaacattggactgaggtggcagtagaaggtgctgcaccagaggcccggcattcc
cattcagcatgttcctaccagggtgggctggtcctgttcggagggcacggaaaaagggga
gagccgctcggggacatcgtggtgatgaagccaaatgagagaggcttctgctgggagacg
atagatgttcagccccctccttgtcccagatattcgcatggtgcccatgtgattggcgat
cgtctgattgtggtgggcggagtctggctgcattcagacagcgtgccaggagtggccgtg
atcgacctttccaggcgctgcagcaccgaattccatctgctcacgtcatcagtgcctcgg
cctctcatgttgcactccttctgctccgagttggtggtccaaaaagaagctcagctgatc
ctgattggtggaggagggaactgtttctcctttgggacacattttaaccctcaacttgtc
agcgtggacctcggcccggcactgatgggaacttaa
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