Syngnathus scovelli (Gulf pipefish): 125974096
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Entry
125974096 CDS
T08785
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125974096 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125974096 (sf3b1)
03036 Chromosome and associated proteins [BR:
sscv03036
]
125974096 (sf3b1)
Spliceosome [BR:
sscv03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
125974096 (sf3b1)
Complex B
125974096 (sf3b1)
Complex C
U2 SnRNP specific factors
125974096 (sf3b1)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
125974096 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
DUF5870
UNC45-central
GST_N_4
DUF2298
Menin
Motif
Other DBs
NCBI-GeneID:
125974096
NCBI-ProteinID:
XP_049584909
LinkDB
All DBs
Position
8:complement(13898580..13909245)
Genome browser
AA seq
1324 aa
AA seq
DB search
MAKIAKTHDDIEAQILEIQGMKANLVEEGDEQGVGLVSTGFYDQEIYGGSDSRFAGYVTS
IAANEQEEDDEEETATSLLGQKKQGYHAPVAILNAIPQSDEQYDPFAEHRPQKIAEREDE
YKARRMQMIISPERLDPFADGGKTPDPKLQVRSYVDVMREQNLSKEEREIRLQLAEKAKS
GDLKAVNGSAASQAAAAAAAAAAAAKRKRRWDQTADQTPTNSTPKKMSSWDQADANSETP
GHTPAHTPSNSRWDETPGRPKGSETPGATPSSRMWDPTPSHTPAGAATPGRDTPGHATPG
HGGATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDE
TPASQMGSSTPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLT
DDELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQVEDRTTKQMNDQP
SGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQIT
DKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEP
LLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALG
IPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQK
VRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAE
YANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQ
HRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLG
AADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRL
NNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAI
VNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICF
ELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA
ETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDR
DLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVA
IGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDEKNMYIRYEL
DYVL
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacacacgacgatatcgaggcccagatcctcgagatccagggg
atgaaagccaacctggtggaggaaggagatgagcagggagtcggccttgtttcaactggg
ttctatgaccaagaaatctatggagggagcgacagccgttttgccggctatgtcacttcc
attgctgcaaacgaacaggaagaagacgatgaagaagaaactgcgacgagtttgttgggt
cagaaaaagcaagggtaccatgctccagtggccattctcaatgccattcctcagtcagat
gaacaatatgatccatttgcggagcatcgtccacagaagatcgcagagcgggaggacgag
tacaaagctcggcgcatgcagatgattatctcgccagagcgtctcgacccctttgcagat
ggaggcaaaacgccggaccccaagctacaggtcagatcctatgtggacgtcatgagagag
cagaacctgtccaaagaagaaagagaaattcgtctgcagctcgcagagaaggccaagtcg
ggtgacctgaaagctgtcaatgggtccgctgccagccaagccgccgccgctgctgctgct
gctgctgccgccgccaagcgcaagcgccgctgggaccagacagctgaccaaactcctacc
aattcgacccccaaaaagatgtccagctgggaccaggctgatgccaattctgagactccg
ggacacactccggcgcacacaccttcaaacagccgatgggacgaaacacctggccggcct
aaaggaagtgagacccccggggccacacccagctcacgcatgtgggaccctacacccagc
cacacgccggccggtgcagccacgccaggcagggacacaccaggtcacgccacaccgggc
cacgggggagccacaggaagcgtccggaagaaccgttgggacgaaacgccaaagacagag
agggagacacctgggcacggcagtggctgggctgaaactccacgtaccgacaggggggat
gagtccgtgggggagactcctactccaggtgccagcaagaggaaatctcgctgggatgaa
acacccgctagtcagatgggctcttcaacaccattgctgactcctggaaagaccccaatc
ggaactcctgccatgaacatggctaccccaacaccaggtcacctgatgagcatgactcca
gaacaactgcaggcgtggaggtgggagcgggagatagacgagagaaaccggcctctcaca
gacgacgagcttgacgccatgtttcctgaaggatacaaggtgttgcctccaccagctggt
tacgtgcccatccgcacaccggctcgcaagctctcggcaacgcctacccccatcggcggc
atgaccggcttccacatgcaagtggaggaccgcaccaccaaacagatgaatgaccaaccc
tctggaaacctccccttcctcaaacctgatgacatccagtattttgacaaattgctggtt
gaggtggatgagtccacattgagccctgaagaacagaaagaaagaaagatcatgaagctg
ctgttgaagattaaaaatggcactccccccatgagaaaggcggccctgcgtcagatcaca
gacaaagctcgtgagtttggagcaggacctttgttcaaccagatcctcccactgctcatg
tccccaacccttgaggaccaagaacgccacttgctggtcaaagtcatcgaccgtattctc
tacaaacttgacgaccttgttcgaccctatgtacacaagatcctggtggtgattgagccc
ctgctcattgatgaggactactacgccagagtagaaggcagagagatcatttccaacttg
gcaaaggcggctggcctggcaaccatgatctctaccatgcgtcccgacattgacaacatg
gacgagtatgtgagaaacaccaccgccagggccttcgcggtggtggcgtctgccctcggc
atcccctccctgctacccttcctcaaagccgtgtgcaaaagcaagaagtcatggcaggcc
cggcacacgggcatcaagatcgtacagcagatcgccatccttatgggatgcgccatcctt
cctcacctgcgcagcttggttgagatcattgagcacggtctggtggatgagcagcaaaaa
gtgaggaccatcagcgccctggccatcgctgcgttggccgaagccgcaacaccctatggt
atcgaatcctttgactcggtgctcaagcccctctggaagggtatcagacagcacagagga
aaaggcttggctgccttcctcaaggctattggctacctgatccctttgatggacgccgag
tacgccaactactacacccgagaagtcatgttaatcctcatcagagagttccagtctcca
gatgaggagatgaaaaagattgttctaaaggtggtgaagcagtgctgtggcaccgatggt
gtggaggccaactacatcaagactgagatcctgccccccttcttcaagcacttttggcag
cacaggatggctttggacagacgtaactatagacagttggtggacaccaccgttgaactg
gccaacaaggtgggagccgcagaaattatctcccgcattgtggacgacctgaaagacgag
gcagagcagtaccgtaaaatggtcatggagaccatcgagaagattatgggcaacctgggc
gccgccgacatcgaccacaagctggaggagcagttgattgacggcatcctgtacgccttc
caggaacagactacagaggattcggtgatgctcaacggtttcggcacggtagttaacgcc
ctcggcaagcgcgtcaagccctacctgcctcagatctgcggtacggtactgtggcgtctc
aacaacaagtcggccaaagtgcgtcagcaagctgctgacctcatctcacgcaccgccgtg
gtcatgaaaacatgccaggaggaaaagctgatgggtcacttgggtgtggtcctgtatgaa
tacctaggagaagaataccctgaagtactgggcagcatcttgggagcgctgaaggccatt
gtaaatgttataggcatgcacaagatgactccccccatcaaagacctgctccctcgtttg
actccgatcttgaagaacagacacgagaaagtgcaggagaattgcatcgacctggtgggc
aggatagcggacaggggtgctgagtacgtgtcagccagagagtggatgaggatttgtttt
gagttgctggagcttctcaaggctcacaaaaaggccattcgcagagccactgtcaacaca
tttggctacatcgccaaggctattggcccacacgacgtcttggccactttgctcaacaac
ttgaaagtgcaggagcgtcagaaccgcgtctgcaccaccgtggccatcgccatcgtggcc
gagacgtgttcgcctttcaccgttctgcccgcgcttatgaacgagtaccgcgttcctgag
ctcaatgtgcagaatggcgtactcaagtcgctgtccttcctgttcgagtacattggcgag
atgggcaaggactacatctacgccgtcacgccgctgcttgaggatgcgcttatggacaga
gatctggtccataggcaaactgccagcgcggtggtccagcacatgtccttgggcgtttac
ggttttgggtgtgaggactccctcaaccatttgctaaactacgtgtggcccaacgtgttt
gagacgtcgcctcacgtcattcaggctgtcatgggcgccctggaaggcttgagggtcgcc
atcgggccgtgccgcatgctgcagtactgcttacagggtcttttccacccggcgcggaaa
gtgcgcgacgtctactggaagatttacaactccatttacatcggttcccaagatgccctc
atcgcccactaccctcaagtgtacaacgatgagaaaaatatgtatatccgctacgagctg
gactacgtgttgtaa
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