Syngnathus scovelli (Gulf pipefish): 125974113
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Entry
125974113 CDS
T08785
Symbol
hspd1
Name
(RefSeq) 60 kDa heat shock protein, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125974113 (hspd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125974113 (hspd1)
03110 Chaperones and folding catalysts [BR:
sscv03110
]
125974113 (hspd1)
03029 Mitochondrial biogenesis [BR:
sscv03029
]
125974113 (hspd1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sscv04147
]
125974113 (hspd1)
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
125974113 (hspd1)
Messenger RNA biogenesis [BR:
sscv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
125974113 (hspd1)
Chaperones and folding catalysts [BR:
sscv03110
]
Heat shock proteins
HSP60 / Chaperonin
125974113 (hspd1)
Mitochondrial biogenesis [BR:
sscv03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
125974113 (hspd1)
Exosome [BR:
sscv04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
125974113 (hspd1)
Exosomal proteins of other body fluids (saliva and urine)
125974113 (hspd1)
Exosomal proteins of breast cancer cells
125974113 (hspd1)
Exosomal proteins of colorectal cancer cells
125974113 (hspd1)
Exosomal proteins of bladder cancer cells
125974113 (hspd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
125974113
NCBI-ProteinID:
XP_049584955
LinkDB
All DBs
Position
8:complement(13915919..13920167)
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AA seq
576 aa
AA seq
DB search
MFRLPTIMKQVRPVCRTLAPHLTRAYAKDVKFGADARALMLQGVDLLADTVAVTMGPKGR
TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
RAIAKEGFDTISKGANPVEIRRGVMMAVETVINELKRLSKPVTTPEEIAQVATISANGDT
EIGNVISNAMKRVGRKGVITVKDGKTLHDELEVIEGMKFDRGYISPYFINTAKGQKCEFQ
DAYLLLSEKKISSVQSIVPALEIANQHRKPLVIVAEDVDGEALSTLVLNRLKVGLQVVAV
KAPGFGDNRKNQLKDMAIATGGTVFGDDAVGVALEDIQAHDFGKVGEVQITKDDTLLLKG
AGAPADVEKRAAEIVEQLENTTSDYEKEKLNERLAKLSDGVAVLKIGGTSDVEVNEKKDR
VTDALNATRAAVEEGIVPGGGCALLRCIPSLEAIKPANDDQKIGVDIIRRALRIPAMTIA
KNAGVEGSLVVEKILQAPPEVGYDAMLGEYVNMVEKGIIDPTKVVRTALLDAAGVASLLS
TAEAVVTEIPKEEKDMPAGGMGGMGGMGGMGGGMGF
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgtctacccacaatcatgaagcaggtaaggcctgtgtgcaggacgctagcgccg
cacctcacacgtgcctacgccaaagacgtcaaattcggcgcagatgcccgcgccctcatg
ttacaaggtgttgacctgctggccgatacagttgcggtcaccatgggtccgaagggccgt
acggtcatcatcgagcagagctggggcagcccgaaggtgaccaaagatggcgtgactgtg
gccaagagcatcgacttgaaggacaagtacaagaacattggtgccaagctggtgcaggac
gtggccaacaacaccaatgaggaggccggtgacggcaccaccactgccacagtgctggca
cgcgccatcgccaaggagggcttcgacaccatcagcaagggggccaaccctgtggagatc
cgtcgcggtgtcatgatggccgtcgaaacagtcatcaatgagctcaaacggctctccaag
ccagtcaccacgcctgaggagattgcacaggttgccaccatctcagccaatggcgacaca
gagattggcaatgtcatctccaacgccatgaagagagttggtcgcaaaggtgtcatcacg
gtcaaggatgggaaaactcttcatgatgagttggaggtcatcgagggtatgaagtttgac
cgtggttacatctctccatacttcatcaacacagccaagggtcagaaatgtgagttccag
gatgcttacctgctgctcagtgagaagaaaatctccagtgtgcagagcattgttcccgct
ctggaaatcgccaaccagcaccgcaagcctctggttattgtggccgaggatgtggatgga
gaggccctcagcaccttggtccttaacaggttgaaggttggcctgcaggtggtcgcagtt
aaagctccaggcttcggagacaacaggaagaaccagctgaaggatatggccatcgccact
gggggcactgtgtttggcgacgatgctgtgggcgtggctctggaggacatccaggcgcac
gactttggcaaggtgggcgaggtgcagatcaccaaagacgacacgctgctcttaaagggc
gccggcgcacctgccgacgtggagaagcgggcggccgagatcgtggagcagctggagaat
accaccagcgactacgagaaggaaaagctcaatgagcgtctggccaagctctcggacggc
gtggccgtgcttaagatcggagggaccagtgacgttgaggtgaacgagaagaaggaccgc
gtgacagacgctctgaacgccacgcgggcagccgtggaggaaggaatcgtgcccggcggc
ggctgtgctctgctgcgctgcattccctccctggaagccatcaaacctgccaacgacgac
cagaagattggtgtggatatcatcaggcgagcactgcgcatccccgccatgaccatcgcc
aagaatgccggcgtggagggctcgctggtggtggagaagatcctgcaggcgcctcctgag
gtgggctacgacgccatgctgggcgagtacgtcaacatggtggagaagggcatcattgac
cccaccaaggtggtgaggacggccctgctggacgcagcgggtgtggcctcgctgctctcc
accgccgaggcggtcgtcacagagatccccaaggaggagaaggacatgccagccggcggt
atgggtggaatgggcggcatgggtggcatgggtggtggcatgggtttctaa
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