Syngnathus scovelli (Gulf pipefish): 125974636
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Entry
125974636 CDS
T08785
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125974636 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sscv03021
]
125974636 (smarcc1a)
03036 Chromosome and associated proteins [BR:
sscv03036
]
125974636 (smarcc1a)
Transcription machinery [BR:
sscv03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125974636 (smarcc1a)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125974636 (smarcc1a)
PBAF complex
125974636 (smarcc1a)
GBAF(ncBAF) complex
125974636 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
Motif
Other DBs
NCBI-GeneID:
125974636
NCBI-ProteinID:
XP_049585262
LinkDB
All DBs
Position
9:1269464..1278185
Genome browser
AA seq
1119 aa
AA seq
DB search
MATLATSVSGPSVGPVGGSGTAVGRKKDGGPSAKFWESSETISQLETVRLWISKHYKKYV
QNDSPSSKSLAGLVVQLLQFQEDSFGRKVNNPALTKLPAKCFLDMKAGGALCHILGSVYK
FKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLSPDMEAKQASKLKDA
IKRHQGSITEDKSKATHIIFPSPLQQDEEEWLRPVMRKDKQVLVHWGLFPDSYDTWMAAS
EVDHDVEEPPSADRPWKVHARWVLDTDAFNEWMNEEDYEVDDNKKPVTFRQKIFPKEEES
SSRTPDRKERKANSASKKRRRSPSPPSTPAESRKKGGKKGNQGHYWKRRGHRGEEEDTED
DVTKDLDDSSAGASIEEGSTSKNAHSKKDSDNTALKGDNGADVDDMEDDSVLSGGKEDDD
GNKADMSRMMDAGEDNVTEQTHHIIIPSYSAWFDYNCIHEIERRALPEFFNGKNKSKTPE
IYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDSDSRP
LPMGPPPTPHFTVLADTPSGLMPLNHRPSPIPPPQQQMANFADKMKDKAIDLQNFGLRID
QYKKNSKGKSVVSSREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPI
EDPYLESSESALGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAARAALEEFSRVR
EEVPAELVEAHVKKVQEAARNTGKVDPAFGLESSGIAGTAPEEPEKTEATDGDKTETDTD
SQQGDKAEAKDEAEKPSESAEKSDKTEAPEKVKKESGEVSEREDEGEDGHEAKAAAPADK
DEDESMETSSSEQEKEKEEKASTEEGEEKRKKLEHDMGEGNIATAAAAALASAATKAKHL
AAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHM
EQLKYAEMKARQQMEQQAAAVAAAQAQGQGHAPGPHPGPPGMHPGGPPPHHGAPPPHHVG
PPPGAAMHPGYPPMGHHPMAPHHPGQTAPMGPGQPLPGRMMAGPPAAGPPPGGMPPMMPP
RHPGAPNGMYPGPAPAQPEAVPPHPVGPPAPSGGRAADN
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgctggcgacctcggttagcgggccgtccgtcggccccgtcggtggcagcggg
accgcggtaggccgcaagaaagacggtggcccgtccgccaaattctgggagagttccgag
accatatcccaactggagacggttcgtctgtggatcagcaagcactacaagaagtatgtc
cagaatgactcaccctccagcaaatctctggccgggctcgtggtgcagctgcttcagttc
caggaggactcctttggacgcaaagtcaacaatcccgctctcaccaagctgccagccaag
tgcttcctggacatgaaggcggggggtgctctgtgccacattctgggctccgtctacaag
ttcaagagtgagcaaggctggcggcgctttgacctgcagaatccttcccgcatggacagg
aatgtggagatgttcttgaacgtagagaagaacttggtgcagaacaactgcctgacccgt
cccaccgtcttcttgtcccctgacatggaagccaagcaagccagtaaactcaaagatgcc
attaagaggcaccagggttccattactgaggacaagtccaaagccacacacatcattttt
ccatcgccgttgcagcaagacgaagaagagtggctgcgtcccgtcatgaggaaagacaag
caggttctggtccactggggtctcttcccagacagctacgacacctggatggcagccagc
gaggtggaccacgacgtagaggagccgcccagtgccgaccgaccttggaaggtccacgcc
agatgggtcctggacacggacgccttcaacgagtggatgaatgaggaagactacgaggtg
gacgacaacaagaagcccgtcactttccgccagaagatctttcccaaggaggaggagtcg
tcttcccgtacgcccgatcgcaaggagcgcaaggccaactcggccagcaagaagaggagg
cgctcaccctcgccgcccagcacgcccgccgagtcccggaagaaaggcggaaagaagggg
aaccaggggcattattggaagcgccggggacaccgcggtgaagaggaggacacggaggac
gacgtcaccaaggacctggacgactcgtctgcaggtgctagcattgaggagggaagcact
tctaagaatgctcattcaaagaaggactctgacaacacggctcttaaaggggacaacgga
gccgatgtcgatgacatggaggatgactcggtgctttctggcgggaaggaggacgatgac
gggaacaaagccgacatgagccgcatgatggacgccggagaggacaacgtgacggagcag
acgcaccacatcatcatcccaagctacagcgcctggtttgactacaactgcattcatgag
atcgagaggagagccctgccagagttcttcaatgggaagaacaagtcaaaaactccagaa
atatacctagcctaccgcaacttcatgatcgacacttaccgtctcaacccccaagagtac
cttacctccacttcctgccgcaggaacctgactggggacgtgtgcgccatcatgcgggtt
cacgctttcctggagcagtggggcttggtcaattaccaggtggactccgacagcagacct
ttgcccatgggacccccgcccacccctcacttcaccgtgctggccgacacgccctctggc
ctcatgcccctcaaccacagaccctcgccgattccgccgccgcagcagcagatggccaac
tttgctgacaagatgaaagacaaagccatcgaccttcagaactttggcctccgcatcgac
cagtacaagaagaactcaaagggtaaatctgtggtgtcctctcgagagtggaccgagcag
gagacgttgctcctgttggaggctttggagatgtacaaagatgactggaacaaagtgtcg
gagcacgtgggctcgcgcactcaagacgagtgcatcctgcacttcttgcgcctgcccatc
gaggacccctacctggagagctccgagtcggcgctgggcccgctggcctaccagcccatc
cccttcagccagtccgggaaccccgtcatgagcaccgtcgccttcctggcctccgtggtg
gaccccagggtggcgtccgccgccgccagggccgcactcgaggagttctcgcgcgtgcgc
gaggaggttcccgccgagctggtggaggctcacgtgaagaaggtgcaagaggcggccagg
aacacgggcaaggtggaccctgcctttggactggagagcagcggcattgctggcaccgcc
cctgaggagccagagaagacagaggccacagatggcgacaagaccgagacggacacggac
tcccagcagggggacaaggccgaagccaaggacgaggcggagaagcccagcgagtcggcc
gagaaaagcgacaagacggaggctcccgagaaagtcaagaaggagtccggggaggtgtcg
gaacgagaagacgagggcgaagatggacacgaggccaaagccgccgcgcctgccgacaaa
gatgaagacgagtccatggagacgtcctcctcggagcaagagaaggagaaggaggagaaa
gccagcacggaagaaggagaggagaaaaggaaaaagctggagcacgacatgggcgaagga
aacatcgccacagcggcggccgccgccctggcgtctgccgccaccaaggccaagcatctg
gcagccgtggaggagaggaagatcaagtcactggtggctctgctggtggagactcaaatg
aagaagttggagatcaagctgaggcactttgaggagctggaaaccatcatggatcgtgaa
aaggaggctttggagcttcaacgtcagcagctgttgaccgagcgccaagccttccacatg
gagcagctcaagtacgccgagatgaaagctcgccagcagatggagcagcaggcggcagcg
gtagccgccgcccaggctcagggccaaggccacgcccccggaccccaccccggcccgccg
ggcatgcaccccggcgggccgcctccccaccacggcgccccgccgcctcaccatgtagga
cccccgccaggcgccgcaatgcaccccggttacccccccatgggtcaccaccctatggcg
ccccaccacccaggtcagacagctcccatgggcccgggacagcccctgcctggacgcatg
atggccggaccccctgccgctggacccccacctggcgggatgcctcccatgatgccgccg
cgccacccaggagcccccaatggcatgtacccaggaccagcgcctgcacagcctgaggct
gtgcccccacaccctgtcggccctccagctccctctggtggccgtgcagcagacaactga
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