Syngnathus scovelli (Gulf pipefish): 125974896
Help
Entry
125974896 CDS
T08785
Symbol
abca7
Name
(RefSeq) phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv02010
ABC transporters
sscv04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
125974896 (abca7)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
125974896 (abca7)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sscv02000
]
125974896 (abca7)
Transporters [BR:
sscv02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
125974896 (abca7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
FliD_N
Motif
Other DBs
NCBI-GeneID:
125974896
NCBI-ProteinID:
XP_049585787
LinkDB
All DBs
Position
10:1764516..1778274
Genome browser
AA seq
2224 aa
AA seq
DB search
MDFFQQLLLLLWKNVTCRRRNKVQLIIEIFWPLFLFVILIYVRNTNRPRQQDECHFPNKA
LPSAGTLPWIQGFICNLYNPCFSSPTFGEAPGQVGNFDDSIISRFFVDAQRLLNYTANQD
VSSLAELRTTIQNVGSKPALWPTLSVAQFLRPNEKFSTYLSTKGGLPPATMNKLLKSQLK
FKPSLAAPPLNLKNLLCDKNQLNQYLILDPNDMNELQPQLCALPDDVAQDAYRIFLSQMD
TTKIVKNFMAMSPADKTALRQSISSVAVQFADIVKVFSSLSSFSDMNEEVSLLSLKNWTH
NYESMTRILCNRSGLITQNVPSINSYVDSDRNMVFQKKDVINTNNTAFCQNLIQRIRVSP
LANVWRVIKPIVNGKLLYTPDTPATQQVMKEVNKTFQDLHIFKGLNDAWLEVGPEIIKTM
ETRVEIPVLKGLLRLPDIATEVNQRLKNTKWTASRLAHFLSSPPPDAPRRSGENATWQDL
YKDINDTITYLAQVTECFFVNKLEGFKDEDQLVRRSLELLEDREFWAGVVFELPNSSSEL
PSNISYKIRMDIDDVTRTDRIKKRFWDAGPVAHPFKDMLYIRGGFVYIQDLVEKALSRVL
TKAQQNIGLYIQQMPYPCFVDDIFLRMLNRTLPLFLTLAWIYSVAVIIKGVVYEKEARLK
ETMKIMGLSTGTLWLSWFISSLVPFLLSAALLIALLKWGEILPYSNMLVVFFFLMAFATA
TITQCFLISTFFSKANMAAACGGLIYFGLYLPYVLFVSWQDRVTITVKVFASFLSPVAFG
FGCEYFSQYEEQGIGIQWYNLRSSPVEDDPYNFATSIAMLYVDAFIYGVAAWYIETVFPG
EYGIPRPWYFLFHVNYWKGISMEDGIPIPSAPAERVKDRIEADPSNLVLGVNISNLVKIY
KKGAKLAVNHLNLKFYEGQITSFLGHNGAGKTTTLSVLTGMFPPTSGTVYINGMDIRYDV
DSIRRTLGVCPQHNVLFDVLTVEEHVWFYGRLKGMSKDEVNAELDSWLEEVGLLHKRHEL
IETLSGGMKRKLSVAIAFVGGSKVVVLDEPTAGVDPYSRRGIWDLLLKYRKDRTIILSTH
YMDEAELLGDRIAIISHGRLRCCGSPLFLKSKLGSGYSLTVVKKESNLLHPGDIRRPCNG
DLGPPYVDNTSSMETLMSLVQRHFPDSKLAEETGREAVVTLPQEASKDSRLAVFLSELDQ
NLTEIGIESYGLSDSKLEDIFLRVVEETAEPDLQTDSTQQTHEEEPKIEPEETDMLSGLG
QGATLTGWNLTRQQLRALFIKRWLYVRRSRRALFAQIVLPAVFVLAALFVSRVVPEFGKY
PSLHLQPCMYGEQYTFFSNDTPANPSMEKLLEALLDLPGFSTKCLENIKHILAQRNDSEP
GREFKRPHVPISTQQIFTTGNWTKERPSPDCQCSTEDARHMLPRCPEGAGGLPPPQVPSP
YGVILQNLTGYNMSDYLVKTYSQILKKSLKGKTSVNELRYGGFSLGSVRPLPKDFIVQDS
VTKIQNKYRDSIPQYSALNDFLNKVVGFLERLDAQNNVKLWFNNKGWHSLVAFVNVLNNG
LLRAGLQDDSQNPSITAYNHPLNLTKEQLGQIAKMSSSVDLVLSVCVMFAMSFVPASFVL
YLIEERASKAKHLQFVSGVQPILYWVATFCWDMLNYTVPAVIVVLIFIGFQPEAYVSVSN
LPALIMLLLFYGWSITPLMYPASFVFTVPSTAYIVLTSVNLFIGINGSIATFVLELFDDE
HLNRVNKVLKKLLLVFPHYCLGRGLIDLAKNQAEADIAQRLGMKQALDYPLRWNLVGKNL
FAMGTQGVIFFAFTLMLQYKFFIAYRSIRNSCLSWSCFKQRSVVCGSPPLGPEDEDVARE
RERVKTGKADADIITTIDLTKIYKAGKKPAVYKLCLGIPRGECFGLLGVNGAGKTSTFRM
LTGDTSITFGEAFLNRHSVLRELDQVHKLMGYCPQFDAICDLLTGIEHLELYARLHGVPE
ESVKEVAQWGVKKMGLSQYAKQEAGSYSGGNKRKLSTAIALIGAPPVIFLDEPTTGMDPK
AKRFMWNCILCFTKEGRAVVLTSHSMEECEALCTRMAIMVNGRFQCLGSVQHLKNRFGDG
YTIILRLADSESNPDTCPVNNYIKNTFPLIELKERHQNVQQYQLPAHACCLAQVFGVLAK
YKELGISDFSVSQTTLDQVFVNFAKEQTDDEQPTNATVDKGAVKNNTVPQHIELRHCSKG
AKEV
NT seq
6675 nt
NT seq
+upstream
nt +downstream
nt
atggattttttccagcagcttcttctcctgctttggaagaatgtcacctgtcgcagaaga
aacaaggttcaactgattattgagatcttctggccactcttcctctttgttatcctcatt
tatgttcgtaacaccaatcgtcctcgtcagcaagatgaatgtcactttccaaacaaagcc
ttaccatcagcaggcaccttgccctggattcaaggtttcatctgcaacctctacaatccc
tgctttagtagcccaacgttcggggaggctccgggccaagtgggcaactttgatgactcc
ataatttctcgtttctttgtggacgcgcagaggcttttaaactacactgcaaatcaggac
gtgtcaagccttgctgaactgaggacgaccatccagaatgtgggaagtaaaccagcgctc
tggccaactctctcagtagcgcagttcctgagacccaatgagaagttttccacctacttg
agcaccaaaggtggccttccgcctgcaactatgaataagctgctgaagagccaacttaaa
tttaagccttctttggctgcacctccgctgaacttaaagaatctgctatgcgacaaaaac
caattaaatcagtatcttattttggatccaaatgatatgaatgagcttcaaccgcaactg
tgtgcgctgcccgatgacgtagctcaggacgcctatcgcatctttctctctcagatggac
acaaccaaaatcgtcaaaaatttcatggctatgagccccgctgacaagactgccctgaga
caatccatcagctccgttgccgtacagtttgcggacatcgtcaaagttttctcatccctc
tccagcttctctgatatgaatgaggaagtcagcctgttatctctcaaaaattggactcac
aattacgagtcaatgacaaggatcctgtgcaatcgctccgggctcatcactcaaaacgtg
ccatcaatcaactcgtatgtagacagcgaccggaacatggtcttccaaaaaaaggatgtc
atcaacacgaataacactgctttctgccagaacttgattcaacgtataagagtcagtccc
ttggctaatgtatggcgagtcatcaaacctattgtcaatggaaaactgctgtacacacca
gacacgcctgcaactcaacaagttatgaaggaggtgaacaagacttttcaagacctccat
atcttcaagggcctgaacgacgcttggttggaagtggggccagaaataataaagaccatg
gagaccagagtggagattccggtattaaagggcttgcttcggttgcccgatatagctacg
gaagtcaaccagcgactgaaaaacacaaaatggacagcctcacgcttggctcatttcttg
tccagtcctccaccggatgcaccgaggaggtccggagaaaatgcaacctggcaagacctt
tacaaagacatcaacgacaccatcacctatcttgctcaagtcaccgagtgttttttcgtc
aacaagttggagggtttcaaggatgaagatcagctggtcaggaggtctttggagctcctc
gaggacagagagttttgggcaggtgtggtgtttgagcttcccaattcttcttccgagctg
ccatccaacatctcctacaagatccgaatggacattgatgatgtgactcgtactgataga
atcaaaaaaaggttttgggatgccggcccagtggctcatccattcaaagacatgctctac
atccgtggaggctttgtatatattcaggacttggtggagaaggcgctttctcgtgttctg
accaaagcgcaacaaaacattggcctctacatacagcaaatgccatatccgtgttttgtg
gatgatattttccttcgaatgttgaatcgcaccctgccacttttcctgacgctggcctgg
atctattcggtggcggtaatcattaagggcgtggtttacgagaaggaagccagactgaaa
gaaaccatgaaaattatgggtttgagtacaggaacgctgtggctcagctggttcatcagc
agtcttgtgcctttcctgctgtcagccgctctcctgattgcgctgcttaagtggggtgag
atcctgccatatagcaatatgttggtggtctttttcttcctgatggcctttgccaccgcc
accatcacgcagtgcttcctcatcagtactttcttctccaaggccaacatggccgccgca
tgcggggggctcatatactttggcctctaccttccatacgtactgtttgtgtcgtggcaa
gaccgtgtcaccatcactgtaaaggtttttgctagctttctgtctcccgtggcctttggg
tttggctgtgagtatttctctcaatacgaggagcaaggcatcgggatacagtggtacaat
ttacgctccagtccagtggaggacgacccgtacaacttcgccacgtctatagcgatgctt
tacgtggatgcttttatctacggggtggcagcctggtacatcgaaacggtgttccctggt
gagtacggcatcccgaggccatggtacttcctctttcatgtcaactactggaaagggatt
tccatggaggatggcattccaattccctctgcccccgcagagcgtgttaaagatcgcatc
gaagccgacccaagtaaccttgtccttggagtcaacataagtaacctggtgaaaatctac
aagaaaggagccaagctggctgtcaaccatctcaacctgaagttctatgaggggcagatc
acgtcatttctgggtcacaacggagcaggaaaaactactaccttatctgtattgacaggt
atgttcccacccacctcgggcacggtgtacattaacgggatggacatccgctacgacgtg
gacagcattcgaaggactttaggtgtttgcccccaacataatgtcctgtttgatgttctt
acagtggaggagcatgtgtggttttatggacgtctgaagggtatgtccaaagacgaggtg
aatgccgagcttgactcttggcttgaagaagttggacttcttcacaaacgtcatgaactg
attgaaaccctctctggtggcatgaagaggaagctgtcggtggcaatagcatttgtcgga
ggctccaaggtggttgttttggatgaacctacagcaggggtggacccgtactcccgtcgg
ggcatttgggacttgttgctgaaataccgtaaagatcggaccattatcctctccactcat
tacatggacgaggcagagctacttggcgaccgcattgccatcatctcccacggaaggttg
cgctgctgtggatcaccactttttctgaaatctaaattgggatctggctactccctgact
gttgtcaaaaaggagagcaatttactgcatcctggagacatacgcagaccctgtaatgga
gacctgggaccaccttatgtggacaatacttcatccatggaaacactgatgtccttagta
cagcgccactttcctgattccaagttggcggaggagacaggacgtgaggcagtcgtgact
ctaccccaggaagcctccaaggacagccgcttggctgtcttcctgtctgaactggatcag
aatctaaccgagattggaattgaaagctatggcctgtctgacagtaaactggaggacatc
tttctacgagtggtagaggaaactgcggaaccagatctgcagactgattctactcagcag
acacatgaagaagagcctaaaatagaacctgaggagacagacatgctgagtggacttggc
caaggtgccaccctgactggatggaatctgacccgccagcagctgagagctctcttcatc
aaacgatggctgtatgtccgcagaagccgtcgagccctctttgctcagattgtgctgcct
gctgtgtttgtgctggccgctctgtttgtcagtcgtgttgtaccggagtttgggaagtat
ccatcgctgcacctccagccttgcatgtatggagaacagtacaccttcttcagcaacgat
actcctgcaaatccatcgatggagaagctactcgaagccttgctggacctgccaggtttt
agtaccaagtgtttggagaacatcaaacacatcctggcccaaaggaatgacagcgaacca
ggacgtgagttcaaacggccccatgtccccatctccacccagcaaatcttcacaacaggc
aactggaccaaggagaggccttctccggattgtcagtgcagcacagaagatgcacggcat
atgctcccaaggtgtccggagggggccggcggacttccccctccacaggttccgagtccc
tatggtgtcatcctgcaaaatctgacgggttataacatgtcagattacctggtgaagacc
tactcacaaattcttaagaagagcctgaagggcaagacctcggtgaatgaacttagatat
ggcggcttttccctcggaagcgtacggcctttacctaaggactttattgtccaagattca
gtcacaaagatccaaaacaagtaccgagactcgattccacagtatagtgcattgaatgac
ttcttaaacaaagtggttggatttctggaacgtcttgatgcacaaaataacgtcaagctg
tggttcaataacaaaggctggcactctttggtggcatttgtcaacgtgctgaacaacggc
ttgctccgagccggactacaagacgattcacaaaatccaagcatcacagcctataatcac
ccactgaacctcaccaaggagcagcttgggcaaattgccaagatgtcgagttcagtggac
cttgtgctttctgtctgtgtgatgtttgccatgtcctttgtgccggccagttttgtgctt
tatctaattgaggaacgagccagtaaagcaaaacacctccagtttgtaagtggcgtccaa
ccaatcctctactgggtggcgaccttttgctgggacatgctgaactacacggtcccggcc
gttatcgtggtgctcatcttcatcggtttccagccggaagcgtacgtctcagtcagcaac
ctgccggctctcatcatgctcctcctcttctacgggtggtccatcacccccttgatgtat
ccagcatcctttgtgttcaccgttcccagcacggcctacattgttttgacctctgtcaac
ctcttcattggaattaatggcagcattgcaacatttgttttggaattgtttgacgatgag
catttaaacagggtgaacaaggtcctgaagaagttgttgctcgtattccctcattactgc
ttgggacgaggactcatagacctggctaaaaaccaagctgaggctgacatcgctcagaga
cttggcatgaagcaggccttggactaccctttgcgttggaacttggttggaaagaacctc
ttcgctatgggaactcagggtgttatcttctttgcctttaccttaatgctgcagtacaag
ttcttcattgcttacaggagtatccgaaactcctgtcttagttggtcgtgcttcaagcaa
cgctcggtcgtgtgtgggagtccgcctcttggcccagaggacgaggacgtggccagagaa
agagagagggtcaaaaccggcaaagccgatgccgacatcatcaccacgattgacctgacc
aaaatttacaaagctggcaagaagccagcagtctataaactctgcctggggatccctcgt
ggcgagtgttttggcctgctgggtgtcaacggcgcagggaagacatcgacttttcgcatg
ttgaccggagacacgtctattaccttcggagaggctttcctcaaccgccacagtgtcctg
agagagttggaccaggttcacaagctgatgggatattgcccgcagtttgacgccatctgc
gaccttttgaccggcattgaacatctggagctgtatgctcggctccacggtgtgcctgag
gagtccgtcaaagaggtggctcagtggggtgtgaagaaaatgggactgagccagtatgcc
aaacaagaggccggaagctacagcggaggcaacaagaggaagctgtccaccgccatcgcc
ctcatcggcgctccgcctgttatatttctggacgagcccaccactggcatggacccgaag
gcaaaaaggttcatgtggaattgcatcctctgcttcaccaaagagggaagagcggtcgtt
ctgacctcccacagtatggaggaatgtgaggctctttgcaccagaatggctatcatggtc
aatggacgtttccagtgtcttggttctgtgcagcacttgaagaacagatttggtgatggc
tataccatcatcctgcgactagcagacagcgaatccaatccagacacgtgccctgtcaac
aactacatcaagaacaccttccccctgatcgagctgaaggagcggcaccagaatgtgcag
cagtaccaacttccagcacacgcctgctgtctggctcaggtgtttggcgtgctggccaaa
tataaagagctgggcatcagtgacttctccgtttcacagaccaccctggaccaggtcttt
gtcaactttgctaaggagcagacggatgatgaacagcccacaaacgccaccgtcgataaa
ggtgctgtaaagaacaacacggtgcctcaacatattgagctgagacactgcagcaaagga
gccaaagaagtatga
DBGET
integrated database retrieval system
