Syngnathus scovelli (Gulf pipefish): 125974985
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Entry
125974985 CDS
T08785
Name
(RefSeq) endoribonuclease ZC3H12A
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125974985
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
125974985
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_4
RuvA_C
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
125974985
NCBI-ProteinID:
XP_049585951
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Position
9:445079..587188
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AA seq
524 aa
AA seq
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MDPTISSLSSGPGEGLELQLRVDFFRKLGYSTAEVDAALSKLGHCADTNATLEELVRIRS
VAPGKDHQEEVKEDRGRASGLVRIEGKKAARSDLRPIVIDGSNVAMSHGNSEVFSCRGIQ
LAVNFFLQRGHTAITVFVPSWRKEKSRPDAAIKDPHILMELERQKRVVFTPSRRVDGKLV
VCYDDRYIVKLAYESDGVIVSNDTYRDLQAENPQWKQCIQERLLMYSFVNDKFMPPDDPL
GRHGPNLDNLLSTKPLASEQKRQLCPYDKKCTYGMKCKYYHPERANRSYLSLADQLREKA
QLSPVKEDIHSPRSMPYLQPPKLNMLDHQWSSHPAQASKNKVIYWEGPSLAPSSGHQEYS
GPSSAHEYLDSGLGSSLSQHSDVYLRNPHRLESAEPRASCGCHGNWDSAGPFSFPAGAAR
KHGAPSAYRSEPFCALPQVPGPLGSPQHHSFGSSCLRRQQHQQQHPACTQQHLDPQRLEL
CKKLQAIFSPQQVATVMHMFPHVTNAEKLAAEIVNQKTPSGMFL
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggacccgaccatctccagcttgagctcaggccccggagagggtctggagctccagctc
cgagtggacttcttccgcaagctgggttactccacggcagaggtcgacgcggcgctgtcc
aagctgggccactgcgccgacaccaacgccacgctggaggagctggttcggatccgcagc
gtcgcacccggcaaagatcaccaagaagaggtcaaggaggatcggggccgagcgtccgga
cttgtcagaattgagggcaagaaggctgcgcggtccgacttgaggcccatcgttattgac
ggcagcaacgttgccatgagtcacggcaacagcgaagtgttctcatgccgaggcatccaa
ctggcagtcaacttcttcctgcagagaggacacacggccattacggtgtttgttccatct
tggcggaaggagaagagccgccccgacgccgccataaaggatccacacatcctgatggag
ctggagaggcagaaacgcgtggtgttcaccccctcgcgccgcgtggacggcaagttggtg
gtgtgctacgacgaccgctacatcgtcaagttggcgtacgagtcggacggcgtgatcgtg
tccaacgacacctaccgcgacctgcaggcggaaaacccccagtggaagcaatgcatccag
gagaggctcctcatgtactcctttgtcaacgacaaattcatgcctccagatgatcctcta
ggccgtcacggtcccaatcttgacaacttactcagtacaaagccactagcgtctgaacaa
aagagacaactgtgtccatatgacaaaaagtgcacttatggcatgaaatgtaagtactac
catccggagcgggccaaccggtcctatctctccttggctgaccaactgagagaaaaagcc
cagttatcgcccgtgaaggaggacatacactcgccacggtcaatgccctacctccaaccg
cccaaactcaacatgttggaccatcagtggtcttctcaccccgctcaggccagcaaaaac
aaagtgatctactgggaaggtccaagtcttgctccgtcttctggacaccaagagtattct
ggacccagttccgctcatgagtacttggactccggcctgggctcctccctaagtcagcac
tctgatgtctacctcagaaacccccacaggctcgaaagcgctgaacccagagcgtcctgc
gggtgccacggaaactgggactctgcgggtccgttctcattcccggctggcgcggcgcgg
aagcacggtgcaccctcggcttaccggtcggaacccttttgtgccttgccccaagttccg
ggcccgctgggctccccgcagcaccacagctttggttcctcctgcttgaggcggcagcag
caccagcagcagcaccccgcctgcacccagcagcacttggacccccaaagactcgaactc
tgcaagaaactgcaggccattttcagccctcaacaggtggctacggtgatgcacatgttc
ccgcacgtgacaaacgccgagaaactggccgccgagatcgtcaatcagaagactccgagt
ggcatgttcctctaa
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