Syngnathus scovelli (Gulf pipefish): 125975106
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Entry
125975106 CDS
T08785
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase isoform X1
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase [EC:
2.8.4.5
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sscv03016
]
125975106 (cdkal1)
Enzymes [BR:
sscv01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
125975106 (cdkal1)
Transfer RNA biogenesis [BR:
sscv03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
125975106 (cdkal1)
Prokaryotic type
Methylthiotransferases
125975106 (cdkal1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
125975106
NCBI-ProteinID:
XP_049586207
LinkDB
All DBs
Position
9:5864411..6115399
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AA seq
563 aa
AA seq
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MPSACESLIDDIEDMVSSSDPTPHERQSARRSIIPRARKRNEILNSEELQADSLIPGTQK
IWMKTWGCSHNNSDGEYMAGQLAASGYKMTNDPAEADLWLLNSCTVKNPAEDHFRNSIKK
AQEQQKKVVLAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQKKDG
GRRLGGARLDLPKIRKNPLIEIISINTGCLNGCTYCKTKHARGDLASYPIEELLERARQS
FQEGVCEVWLTSEDTGAYGRDIGTDLPTLLWRLVEEIPEGAMLRLGMTNPPYILEHLEEM
AKILNHPRVYAFLHVPVQSASDSVLMDMKREYCIDDFRRVVDFLKERVPGVTIATDIICG
FPGETEEDFRETMDLVNLYRFPSLFINQFYPRPGTPAAKMEQVPPHVKKQRTKELSQLFH
SYNPYDHKVGERQHVLVTEESFDSQYYVAHNKFYEQVLVPKRLEFKGKMIEVDIYEAGKH
FLKGQPVKDTKPFTPSIAAPLQKGEVSGLMQEQMSNGVQGPSSMSSSVLLIGSYSVDREL
LKRLGVGLALAAAFLAFIVERIY
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgccttcggcctgtgagtctctgattgacgacattgaggacatggtgtcctcaagtgac
cccactcctcatgaaaggcagtctgctcgtaggagtatcatacccagagccaggaaaaga
aatgaaattttgaacagtgaggagctacaagctgacagtctaattcctggcactcagaaa
atttggatgaaaacgtggggctgcagtcacaacaactcagatggggagtacatggcggga
cagcttgctgccagcggatacaaaatgacgaatgacccagccgaagcagatttgtggctt
ctgaacagctgcactgtcaaaaatcctgcagaagaccacttcagaaactcaatcaaaaaa
gcccaagagcaacaaaaaaaggtggtattagccggttgtgttccacaggcccaacctcga
atggactatctcaaagggctcagcatcataggggtccaacagattgatcgagtggtagag
gtggtggatgaggctgttaaaggtcattcagttcgtcttttgggccagaagaaagatgga
ggccggaggctagggggagcaagacttgaccttcccaaaataaggaaaaaccctctaatt
gaaatcatctccattaacacagggtgcctgaatggatgtacctattgcaagacaaagcat
gccagaggagacctggccagctatcccatagaagagctgcttgaaagagctcgacagtct
ttccaagagggagtatgtgaagtctggctgaccagcgaagacactggagcttatggccga
gacattgggactgacctgcccactctactgtggaggctggttgaggagattcctgaaggg
gctatgcttaggctcgggatgaccaaccctccttacatcctggaacaccttgaggagatg
gcgaagatattgaatcatccgcgcgtctatgccttccttcatgttcctgtacaatcagcc
tcagacagcgtactcatggacatgaagagagagtattgcattgatgacttcagaagagtg
gttgacttcttgaaagagcgggtcccaggtgtaacaattgcgacagatataatctgtggc
tttcctggcgagacagaggaagacttcagagaaacgatggacttggtgaacctttatcga
ttccccagtctcttcatcaatcagttctaccccagacctgggacaccagccgccaaaatg
gagcaagtgcctccacatgtgaagaaacaacggacaaaagaactgtctcaactattccac
tcctacaacccttacgaccacaaggttggcgagagacaacatgtgttggtgacagaagag
tcatttgattcccaatattatgtggctcacaacaagttctatgagcaggtactggttccc
aagaggttagagttcaaggggaaaatgattgaagtagacatctatgaggcaggaaaacac
ttcctgaaaggacaaccagtgaaggacactaaacctttcactccctccatcgctgcccca
cttcaaaagggagaagtgtctggcctgatgcaggagcagatgtcaaatggtgtccaaggt
ccctcttctatgtcttcctctgttttgttgattgggtcttacagtgtggaccgagagcta
ttgaagaggctgggggtcggactggcgctggcagccgcctttctggcttttatagtggag
agaatctattaa
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