Syngnathus scovelli (Gulf pipefish): 125975127
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Entry
125975127 CDS
T08785
Name
(RefSeq) E3 ubiquitin-protein ligase NHLRC1 isoform X1
KO
K10602
E3 ubiquitin-protein ligase NHLRC1 [EC:
2.3.2.27
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125975127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sscv04121
]
125975127
Enzymes [BR:
sscv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125975127
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125975127
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
RING_XB3-XBAT31
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
SUN
Motif
Other DBs
NCBI-GeneID:
125975127
NCBI-ProteinID:
XP_049586243
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All DBs
Position
9:3928159..3930410
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AA seq
393 aa
AA seq
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MTDSCRRHGDIMRPEGTLREIRINLLECKVCFEKFNTQQAQRRPQNLSCGHVLCVECVGA
LSHPLLRKLECPFCRQLCHVDATSHCQPLSDLQELLLFTPDKQEDEEEVSGVSGKTLQLS
LTFGGWGTLINPTGLAVMPSSGTLFVVHEGEKSVVVFTPQGKKRHAFGKRGHAAEEVCYP
VDVAVTSCGHVVVTDAGDKSVKVFTSRGNHVITVKAGFSMPWGVDTDSNGRILVSDVQAG
TLSRIKVDYKHGVTLEEGTVASQLDNPKAVACCRTNYHTAVMEHVTEHIRKQSYSRLTVF
TPDFHILYQTDNLSLSLTASVTINMSAVTFDRNGHLLVVDSHRGMIWTFGRVQSGAALAP
LVAEHLIRPVGLVPLNNTLIIVDGGDHTVKLYS
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgacggacagctgccggaggcacggcgacattatgagacctgagggcacgttgcgagag
atccggatcaacttgcttgagtgtaaagtctgctttgaaaagttcaacactcagcaggcc
cagcgtagaccgcagaacctgtcgtgcggtcacgttctgtgtgtggaatgcgtgggggct
ctgtcccaccctctcctgaggaagctggagtgccccttctgtcgacagctgtgccatgtt
gacgccacctcccactgtcagcctcttagtgacctgcaggagctgctcttgttcactcct
gacaaacaggaagatgaagaagaggtctcaggtgtgagtggcaaaaccttacaactcagt
ttgacctttggcggctgggggactcttattaatccgactggattggcggtgatgccatcc
tcagggactttgtttgtggtgcatgaaggtgagaagagcgtggtggtgtttactcctcaa
gggaagaagcggcacgcttttggaaaaagaggacacgctgctgaggaggtttgttaccca
gtggatgtggcggtgacctcttgtggtcacgtggtggtgaccgacgcgggcgataaatcc
gtcaaggtgtttacatccaggggaaaccatgtgatcacggttaaggctggcttctcgatg
ccgtggggggtggacacggatagcaacgggcgcatcctggtctcggacgtccaggcggga
acgctgtcccgcattaaggtggactacaaacatggcgtcacactggaggagggaacggtg
gcttcgcaactggacaatccgaaagccgtggcctgctgcaggacgaactatcacacggcg
gtgatggagcatgtgaccgagcacataaggaagcaaagttactccagactgaccgtgttc
actccagacttccacattctttatcagacggataatttaagtcttagcctgactgcctcg
gtcaccataaacatgtccgctgtgacctttgacagaaacggacacctgcttgtcgtcgac
tcacatcgagggatgatttggacttttgggagggtgcaaagcggtgctgccctcgctcct
ctcgtggcagagcacctcattcgacctgttggattggtgccacttaataatactcttatc
attgtggacggcggtgaccacacagtcaagttatattcttga
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