Syngnathus scovelli (Gulf pipefish): 125975130
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Entry
125975130 CDS
T08785
Symbol
cnot10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125975130 (cnot10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125975130 (cnot10)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125975130 (cnot10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_14
ARM_TT21_N
TPR_8
ANAPC3
TPR_7
ARM_TT21
TPR_10
TPR_MalT
TetR_C_5
Motif
Other DBs
NCBI-GeneID:
125975130
NCBI-ProteinID:
XP_049586250
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Position
9:7476119..7482364
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AA seq
733 aa
AA seq
DB search
MAENTEQNEAKHDKSSSPGMTDQEKQMAASAYDSFLAKKYDESLRHLEALQELNKEDYKI
ALNKAIVEFYKSGQTTTGNLKQSLMAMKTQVHTATEDVDGLDDVENSFLYYNQAIIHYHM
RQYSEAISIGERLYQFLEPFEEKFAQAVCFLLVDLYLLTFQPEKALHLLAVLDKLSVQGS
NKNGKGENNKDGGNQKAEFSAMIEAAKSKMHQYKVRAYIQMKSSKACKREIKSVMNTSGN
SAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAEHPGPIKTGECVRCMFWNNLGCIHFAMGK
HNLGIFYFKKALQENDHTCAQLGDGGNGQAKKFTGIPMCALLANKRYELLYNCGIQLLHI
GRPLAAFECLIEAVQVYHSNPRLWLRLAECCISANKGGSEQESKGLPCKKGIVQSIVGQG
YHRKIVLASQSMQNTIYSEGQSAAIPVASMEFAAICLRNSLLLLPEHQQQDVKMENSSKN
SSQSGSTESGSENSDACSGKGQEADRLLSAAPSSPLRKQEVENLRCSILACSAYVALALG
DNLMALNHAEKLLHQTKVSGSLKFLGHLYAAEALISLDRISDAIAHLNPENVIDVSIGVL
TSEQDPAGSDKGDEPVESSGKLTPLCYPSNVTSARAMMLFNLGSAYCLRSEYDKARKCLQ
QAASMVNTKEIPPEAILLGVYLELQNGNTQLALQIIKRNQLLPAAVQRVSPDSSKKLMQP
IQLPSPFTQVQRK
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaacacagagcaaaacgaggcaaagcatgacaaatcatcatcacctggaatg
acagaccaagagaaacaaatggcagccagtgcatatgattcgtttttggctaagaagtac
gacgagtctttgagacaccttgaagctttgcaagaattgaacaaagaggactacaagatt
gctttgaataaagctattgtagagttttataaaagtggtcagactaccacaggaaacctt
aagcaaagcctaatggcaatgaagacccaggttcacacagccaccgaagatgttgatggg
ttggatgatgttgaaaatagtttcttgtactacaatcaagccattattcactaccatatg
cggcaatactcagaagccatttccattggagagagactctatcaatttctggaaccgttt
gaagagaagtttgctcaggccgtgtgtttcctgctggtggatctgtacctgctcacgttc
cagccggaaaaggccctccacctgttggctgtgctggataagctatctgtacaaggaagc
aataagaacggcaaaggagagaataacaaagacggtggaaaccagaaggcagagttttct
gctatgatagaggcagctaaatcaaagatgcaccagtacaaagtaagagcctacattcaa
atgaaatcctccaaagcgtgtaagagagagatcaagtcagtgatgaacacatcaggaaat
tctgcaccatcactattccttaagagcaactttgaatatctgagaggaaactaccggaaa
gcagtaaagctgctcaacagttccaatatagcagaacaccccggccccatcaaaacaggt
gaatgtgtccgttgtatgttctggaacaatcttggctgcattcactttgcaatggggaaa
cataacctcggaattttctacttcaagaaggcattgcaagaaaatgaccatacgtgtgca
cagctcggagatggtggcaatggacaagctaagaaattcacaggtatccccatgtgtgct
ctactagccaacaaacgctatgaacttctatataactgcggcatccagttgctgcacatc
ggcaggcctctggccgcattcgagtgtctgattgaggcggtgcaggtttaccattccaac
cctcgactttggctgcggctcgcagagtgttgtatctctgctaataaagggggttcagaa
caggagagcaaaggtttaccttgtaaaaaaggcatcgttcagtcaattgtgggacaggga
taccatcgcaagattgtcttggcatcccagtccatgcagaacactatttatagtgagggc
caatcagcagccattccagttgcaagtatggagtttgctgccatttgtctaaggaactct
ctgctgttgctgcctgaacaccaacagcaggacgtcaagatggagaatagctctaagaat
tcaagtcagtcaggaagcaccgagagtggcagcgagaacagtgatgcctgcagtgggaaa
ggtcaggaggccgacaggttactctctgcggcgccatcgtctcctctcagaaaacaggaa
gttgaaaacctcagatgctccatcttggcatgtagtgcctatgtggccttagcactagga
gacaacttgatggctttaaaccatgctgagaaactgctgcatcaaaccaaggtgtcaggg
tcactcaagttccttggtcacctgtacgcggctgaggccctcatttcgttggacaggatc
tccgatgccatcgcgcacctcaacccggagaatgtcatcgacgtgtcaatcggggtgctg
accagtgagcaagacccagcaggttctgataaaggagacgaacctgttgaatcttcaggc
aagctgaccccgctctgttatcccagcaatgtaacgtcagctcgggccatgatgctcttc
aacttgggaagcgcatactgcttacgaagcgaatatgacaaagcccgcaagtgccttcaa
caggctgcatccatggtgaatacgaaggagattccacctgaagccatcttgttgggagtc
tacttggagctacaaaacggaaatactcagctggccttgcagatcatcaaacgcaaccag
ctactacccgcggcggttcagagggtgtcaccagattcctccaagaaactcatgcagccg
atccaacttccctccccgttcacacaagtccaacgtaaatga
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