Syngnathus scovelli (Gulf pipefish): 125975334
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Entry
125975334 CDS
T08785
Symbol
dcaf13
Name
(RefSeq) DDB1- and CUL4-associated factor 13
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sscv03009
]
125975334 (dcaf13)
04121 Ubiquitin system [BR:
sscv04121
]
125975334 (dcaf13)
Ribosome biogenesis [BR:
sscv03009
]
Eukaryotic type
90S particles
Other 90S particles
125975334 (dcaf13)
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
125975334 (dcaf13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sof1
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
eIF2A
MIOS_WD40
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_SPT8
NBCH_WD40
MiaE
Motif
Other DBs
NCBI-GeneID:
125975334
NCBI-ProteinID:
XP_049586712
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All DBs
Position
9:complement(8759524..8764732)
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AA seq
445 aa
AA seq
DB search
MKVKVLSRNPDDYVRETKYDIQRVPRNYDPTLHPFEVCREYTRALNATKLDRVFAKPFLS
SLDGHRDGVNCMAKHTKSLSTVLSGSCDGEVKVWNLTKRECLRTFQAHEGFVRGMAVRHC
GSSFFTVGDDKTIKQWKMEAPGYGEEVEPLSTILGKTVFTGIAPHQKDGVFATCGQQVDI
WDEQRSTPIRSFTWGVDSFSSVHFNPVETELLASCASDRSIILYDMREAAPLKKVIMTMR
SNTLCWNPMEAYFFTACNEDYNLYTYDMRHLDKPVMVHFDHVSAVLDVDYSPTGREFVSA
SFDKTIRIFPMNASHSRDVYHTKRMQHVICVKWSADNRYILSGSDEMNIRLWKAVASEKL
GVLTPREKEATNYRLKLREKFKHFPQIRRIAQHRHLPKGIYDQSKQLKEMKEARRRKEKN
VRAHSKPGSVPVVSEKEKHVVTVVK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtaaaagtgctctcgaggaacccggacgactacgtccgggagaccaaatacgat
attcagcgcgttcctagaaactatgaccctacacttcatccatttgaggtgtgcagagaa
tacactcgggcccttaatgccaccaagctggatagggtctttgcaaagcctttcctgtcc
tcattggatggacacagagatggtgtgaactgcatggccaagcacaccaagagcctctcc
acggtgttgtctggctcctgtgatggggaggttaaagtgtggaatcttaccaaacgtgaa
tgcctccgcacgttccaagcccatgaaggatttgtccgtggaatggctgttcgccattgt
ggatcatccttcttcacggttggagatgacaaaacaatcaaacaatggaaaatggaggcc
ccgggttatggtgaggaagtggagccacttagtacaattctgggcaagacagtcttcact
gggattgctcctcatcaaaaagatggcgtgtttgcaacatgtggccagcaggtggacatc
tgggatgagcagaggagcacccctatccgttctttcacctggggtgtggacagcttcagc
tctgtccattttaaccccgtggagactgaacttcttgcaagctgcgcctctgacagaagc
atcatactgtatgacatgagagaagcagctccgcttaaaaaggttatcatgacgatgagg
agcaacacgttatgctggaatccgatggaggcctatttcttcacagcatgtaatgaagac
tataatctttacacatatgacatgagacacctggacaagccggtcatggtacacttcgat
cacgtgtctgcagtgctcgatgttgactattcccccactggcagagagtttgtgtctgcc
agttttgacaagaccatccgcatcttccccatgaatgctagccatagtagggacgtctac
cataccaaacgcatgcagcatgtcatctgcgtaaagtggtcggccgataaccgttatatt
ttgagtgggtcagatgaaatgaatattcgtctgtggaaagcggtggcgtcagagaaattg
ggagtgcttacgccccgagagaaggaggccaccaactaccgccttaagctgagagagaag
tttaagcacttcccacagatcagacgcatcgctcagcatcgacatctcccgaagggcatc
tacgaccagtctaagcagcttaaggaaatgaaggaagctcgccgtagaaaggagaagaat
gtccgcgcgcacagcaaaccaggaagtgtgcctgtggtgtccgaaaaagaaaagcacgtc
gtgactgtggtcaaatag
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