Syngnathus scovelli (Gulf pipefish): 125975336
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Entry
125975336 CDS
T08785
Symbol
cthrc1b
Name
(RefSeq) collagen triple helix repeat-containing protein 1 isoform X1
KO
K25700
collagen triple helix repeat-containing protein 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
sscv03037
]
125975336 (cthrc1b)
Cilium and associated proteins [BR:
sscv03037
]
Other cilia and associated proteins
Stereociliary proteins
125975336 (cthrc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CTHRC1_C
Collagen
Motif
Other DBs
NCBI-GeneID:
125975336
NCBI-ProteinID:
XP_049586715
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All DBs
Position
9:complement(8768709..8772984)
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AA seq
230 aa
AA seq
DB search
MSPVTLRLLLLLVCLTFSVYGVEKVRSRGYRKDPDGDKYGSCMQGPAGTPGRDGNPGANG
IPGTPGIPGRDGLKGEKGECINEIFEEPWRPNYKQCAWNSLNYGIDLGKIADCTFTKLRS
DSALRVLFSGSLRLKCKNACCQRWYFTFNGAECMAPLPIESIIYLDQGSPELNSTINIHR
TSSVEGLCEGVKAGLVDVAVWVGTCADYPRGDASTGWNSVSRIIVEELPK
NT seq
693 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctgtaaccctgcgccttttgctactgctcgtctgcttgactttctccgtgtac
ggcgtggaaaaggtgagaagtagaggataccgaaaggatcctgacggggataagtatggc
agctgcatgcagggtccagcaggaactcccggcagagatggtaaccctggggccaacggc
atccccggaactccaggcatccctggacgtgatggactcaaaggggagaagggcgaatgt
atcaacgagatcttcgaggagccctggaggcccaactacaagcagtgtgcctggaactcc
ttgaattatgggatcgaccttgggaaaatagctgactgcacatttaccaagctgcgctca
gacagcgccctcagagtcctcttcagtggctccctcagactcaagtgcaagaacgcatgt
tgtcaaagatggtacttcaccttcaatggagcagagtgcatggcaccactgcccatcgag
tccatcatatacctggaccaaggcagtccagagctcaactcaaccatcaatatccacaga
acatcctcagtggaaggactgtgtgagggtgtgaaagcagggttggtggacgtggctgta
tgggtggggacctgcgctgactatccccgcggtgatgcatccacggggtggaattcagtt
tccaggattatcgtcgaagagcttcccaaataa
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