Syngnathus scovelli (Gulf pipefish): 125975353
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Entry
125975353 CDS
T08785
Symbol
rad54b
Name
(RefSeq) DNA repair and recombination protein RAD54B
KO
K10877
DNA repair and recombination protein RAD54B [EC:5.6.2.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125975353 (rad54b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125975353 (rad54b)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
125975353 (rad54b)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
Motif
Other DBs
NCBI-GeneID:
125975353
NCBI-ProteinID:
XP_049586767
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All DBs
Position
9:3253950..3260916
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AA seq
918 aa
AA seq
DB search
MRRSAAPSQLRGNAAKKPCFVPPGAASSWTGAEPKIQYPEFGLDNALNKVQRSLGVPPPN
QNAHVQAAPALSKALARVLSATESKENVIVTEHPNAASQEVSIPQHIRGAGLPQACAVSK
PVPDTECNPDTARYFSVMWCKASKKKHKRWEGDAVLVTRGRTATLKDMEGKNIGQGSGYK
MSVLASLAEGETLMIGAKEVEVMGVISAETFATGRCFQEGQVEDVLPKTTPAPSHRLASK
PFRPPTLSGRAEHLESQPREEQICKPRHDPLAPGALVMPRPSPNHQWSNNKSGLPVVDVV
VDPHLTAHLRPHQRDGLLFLYECVMGMRAAGRYGAILADEMGLGKTLQSVALCWTLLKQG
PYGGKAVTKRVLVVTPGSLVQNWAAEFNKWLGRERITVFTVDQDHRIEQFVLSNLHNVLV
ISYEMLLRSLEQVQKVEFGLIICDEGHRLKNSSIKTSSALSSLSCTRRVILTGTPVQNDL
QEFYAIIDFVNPGILGSSTAYRKVFEEPILRSRQPSCSEEDRSLGDERASELSRLTGVFI
LRRTQEIINDYLPPRLDWTLFCRASLLQQEVYRQLLCHRIFRACLQGSVQTHTHLACITA
LKKLCNHPALLHANVMDKMKYDSEESSLYEGLPVLFPENYSSDNLNPHDSGKLLVLLDLL
STIRQLSPSDRVVIVSNYTRTLDMLQKLCVRMSYTFCRLDGQTPTNQRQRLVDGFNSPYS
STFLFLLSSKAGGVGLNLVGASHLVLYDLDWNPANDIQAMARVWRDGQKKTVHTYRLLTA
GTIEERIFQRQVSKQGLSGTVVDLGKGSEHASFSASELRDLFSLTDTPSLTHDLLNCNCK
MDGSVNNMEEEDDEPSDNRPCQLGRDRCGPAQKHLSMSELMRWRHFSGDARTFFDPYLDH
ARDHITFAFQTTISHVDQ
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgagacgctcagcagctcccagccagttacgaggcaatgctgcaaaaaagccttgtttt
gtccctcctggagctgcttcttcatggactggcgcagaacccaaaatccagtaccctgaa
tttggcttggacaatgccttgaataaggtccagagaagtctaggagttccacctcccaac
caaaatgcccatgtccaggcagcaccagctttgtccaaagctttggcccgagtgctcagt
gcaactgaaagtaaggagaacgttattgtgacggaacatccgaacgctgcatcacaggag
gtctcaataccacaacacatcagaggggcaggcctccctcaagcatgtgccgtgtcaaaa
ccagtcccagatacagaatgcaacccagacacggcgcgatacttcagcgtgatgtggtgt
aaggccagcaaaaagaaacacaaacgctgggagggggacgccgtgctggtgaccaggggt
cgcacagccacgctgaaagatatggagggcaagaacattggacagggcagcggctacaag
atgtcagtgctggcctctctcgccgaaggagagaccctgatgatcggcgccaaggaagta
gaggtgatgggcgtcatatccgcagaaacctttgccacgggacgttgtttccaagaagga
caggtagaagatgttctcccaaagacgactccagctccttcacatcgcctcgcatctaaa
cctttccgccccccgactctgtcggggagagcagagcatctcgaatcacaaccgagggag
gaacaaatctgcaagcctcgccatgatccactagcacctggtgcgctggtgatgcctcgg
ccctcgcccaaccaccaatggtctaataacaaatcggggcttcccgtggttgatgttgtg
gttgacccgcacctgacggctcacctgcgcccccatcagagagacggcctgctttttctc
tacgaatgcgtcatgggcatgagagccgctgggcgttacggggccatcctggccgacgag
atgggtctggggaagaccctccaaagtgtggctctctgctggactttgctcaagcaggga
ccgtacggaggaaaagcggtcaccaagcgtgtgttggtggttactccaggaagcctggtg
cagaactgggccgccgaattcaacaaatggctgggccgtgagaggatcaccgttttcaca
gtggatcaagaccacaggatcgagcagtttgtgttgtcaaacctgcacaacgttctcgtg
atcagctacgagatgctgctgcgctccctcgagcaggttcaaaaagtggaattcggtctc
atcatctgcgacgagggccacagattaaaaaacagcagcatcaaaacgtcttcagctctc
agcagcctgagctgcactcgtcgggtcatactcacaggcaccccggtccagaatgacctg
caggagttctacgccatcatcgactttgtaaatccgggcatacttggctccagcactgcg
tatagaaaagtatttgaagagcccatcctacgttccaggcagccttcgtgctcagaggag
gacagatctttgggagacgagcgagcctctgagctctcccgactcaccggcgtgttcatc
ctgaggaggacccaggagatcatcaatgattacctgccgccacgcctggactggaccttg
ttctgcagggcgtccctgctgcagcaagaggtctacaggcagctcctctgccacagaatc
ttccgagcttgcctccaaggctccgtgcaaacacacacacacctggcctgcatcaccgcc
ctgaaaaaactgtgtaaccacccggccctgcttcacgccaacgtcatggacaaaatgaag
tacgattccgaggagagctcactctatgaaggccttcctgtgttattcccagaaaactac
tcttcagataacttgaaccctcatgactccgggaaacttttggttttgttggatctcctg
agtaccatcagacagttgagtccatccgacagggtagtgatcgtttccaactacactcgg
acgctggacatgctccagaagctttgcgtgcgcatgagttacacgttctgtcggctcgac
ggacaaacgcccaccaatcaaaggcagcggctggtcgacggcttcaacagtccttactct
tctacattcctgtttctactcagctccaaagctggcggcgtaggactcaacctagtaggg
gcttcccatctagtactctatgacctcgattggaacccggctaatgatattcaggctatg
gcacgagtgtggcgcgacggacagaagaagaccgtccacacttaccgtctcctcactgca
ggaactattgaggagcgcattttccagcggcaagtgtccaagcaggggctttccgggacg
gtggtggacctcggcaaaggctcggaacacgccagcttctccgccagcgagctgcgagat
ctcttcagcctgaccgacacgccatcactcactcacgaccttttgaactgcaactgcaaa
atggacggctcagtcaacaatatggaagaggaagacgatgaaccttctgacaatcggccg
tgccagctgggtcgtgaccgctgcggtccggcccaaaagcacctcagcatgtccgagctg
atgcggtggagacatttctctggggacgcccgcaccttctttgacccttacctcgatcac
gcccgagaccacatcacctttgcctttcaaacaaccatctcccacgtggaccagtaa
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