Syngnathus scovelli (Gulf pipefish): 125975393
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Entry
125975393 CDS
T08785
Symbol
rorc
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125975393 (rorc)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
sscv03310
]
125975393 (rorc)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
125975393 (rorc)
Nuclear receptors [BR:
sscv03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
125975393 (rorc)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
125975393
NCBI-ProteinID:
XP_049586918
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Position
9:complement(3049897..3065386)
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AA seq
509 aa
AA seq
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MDYEQCDAPPTDNSIKRGAVSKKTHLTQIEVIPCKICGDKSSGVHYGVITCEGCKGFFRR
SQLPTVSYSCSRQSNCIIDRSSRNRCQHCRLQKCLAQGMSKDAVKFGRMSKRQRDSLIAE
VERHRQQQQQQQQQQQLQMDAQPGLPYNTKERQHCPPQPLQPMTSTCSYTGDSELLFFTS
DVHPYLLYSPNQPQVSDMIYRSSGVSPSSRAHMREDNNGHASIRGLESRPSSHDPMAIDP
YNQPEDPHLPYPHALRNIDELCDRIVRSNKDTCQYQAEELQALKWKMFSREEIQAYQSKS
VDEMWQHCAIRLTDAVQYVVEFAKHIPGFRLLSQNDQIVLLKNGSMEVVLVRMSRFFNTE
NNTVFFDGKFAGTEVFKSLACGDLIAAVFDFAHSVCALKLTDQQVALFSALVLINADRPC
LEDRGRVQRVQKNVELGLTQILHRDNRDSLMHKLYQTMSVLRSLCSLHTEKLRWFSQRYP
LTAHSLFPPLYKELFASEAEVMLLPGATH
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggattatgaacaatgtgacgcgccccctactgacaactccatcaaaagaggagctgtg
tccaagaagactcatttgactcagattgaagttatcccttgcaagatctgtggtgataag
tcctctggagtccattatggagtcattacatgtgaaggctgcaagggatttttccggcgt
agccagctgcccacagtgtcctactcctgttccaggcagagtaactgtatcatcgaccgg
tccagccgcaatcgctgtcagcactgccgtttgcagaaatgtttggcccagggcatgagt
aaagatgctgtgaagtttggccggatgtccaagcgccagcgggactctctcatcgctgag
gtggagcgacaccgacagcaacaacagcagcagcagcagcagcagcagctccaaatggac
gcccaaccaggcctaccctacaacaccaaagagcgccaacattgccccccacaacccctt
cagcccatgacatccacctgctcctacaccggcgactctgagctgctgttcttcacttcc
gatgttcacccctacttgctgtactcccccaaccagccacaagtgtctgatatgatctac
agaagctccggcgtatcgccctcgtccagggcccacatgagggaggacaacaatggacac
gcttctattagaggattggaatccagaccgtcctcacatgacccaatggcgattgatcct
tataatcaaccagaggatccccacttgccctatcctcacgctctgcgtaatatagatgag
ctgtgcgacagaattgtacgctccaacaaagacacctgtcagtaccaagcagaggagctg
caggcgctcaagtggaaaatgttcagcagagaggagatccaagcctaccaaagcaaatca
gtggatgaaatgtggcagcactgtgccatccggctgaccgatgccgtgcagtacgtggtg
gagtttgcaaaacacatcccgggattccgtctgctcagccagaacgaccagatcgttctt
ctcaagaatggttctatggaggttgtcctcgtgaggatgagtcgcttcttcaacacagag
aacaacacggtattctttgatggcaaatttgcaggaactgaagtcttcaagtctttggca
tgtggcgacttaatagcggcagtgtttgactttgctcacagcgtgtgtgctttaaagctc
accgatcagcaggtggcgctcttcagtgctttggtcttgatcaatgccgaccgtccatgt
ctggaagatagaggcagagtgcagcgagtgcaaaaaaatgtggagttaggtctcacgcaa
attctgcacagggacaaccgggacagtctaatgcacaagttgtaccagacaatgtccgtg
ttacgttcactgtgcagtctgcacacggagaagttacgttggttcagtcagcgctacccg
ctcaccgcccactctcttttcccaccgctctataaggagctgtttgcttctgaggcagaa
gtgatgctgctgccgggagctacacactga
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