Syngnathus scovelli (Gulf pipefish): 125975487
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Entry
125975487 CDS
T08785
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125975487 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125975487 (cnot3a)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125975487 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125975487 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
125975487
NCBI-ProteinID:
XP_049587058
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All DBs
Position
9:11086563..11095180
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AA seq
906 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEETGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIDELKRLIERHRFHI
RMLETILRMLDNDSVPVDAIQKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPAALVA
TSPSGQGTMEDEMYLHSSSTPTSTTSSSPIPPSPATCAAENSEDDKKRGRSTDSEVSQSP
VKNGTPSLLSSFSSSTTSGSSSSSSLVSMASVVGGIPVVPTSSGLIGSFSSAVQQQHQHL
PVQQQPQQAQPQNPSQQQQPPLSKPSAPSNSTPNPPSNLLLPASSAPSVPTPSTAISSAA
SSLSQPSSGSASVSSLGLGMGLGLGKGGITGTSGANQMSALGLGVHSAPLSTMAGLISGS
TPTPYAQAAASGGLGLSGGSTPASISVESSTSIITTSGSSGVTTNGAATALGLLGSGHGS
LSGSILGLVSGQNASSATSQVPPSSVSASPGVVGMMGSNSGSVGIVGGVSAAPARPPSGL
KQNGSTSYSAVVAESSTESALSTPSQSQSSQPSSLSSSASQPLDNGPSLISSITLPPSSP
SPSFSDSTPGGGSLLNGPHSYTQASEGLKAPEPLISLKAMAERAALGSGLDGEIPNLHLT
ERDIFSSSTAPGTPAAPQPSVSEVSIPPSLGVCPLGPTPLPKDQLYQQAMQESAWTHMPH
PSDSERIRQYLMRNPCPTLPFHYQMPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLS
AKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYL
EDRDLQ
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaacttcaaggtgagattgacagatgcttgaaaaaagtagcggaa
ggtgtagaacagtttgaagacatttggcaaaagcttcacaatgcagctaatgcaaaccag
aaggaaaaatacgaagctgacctcaagaaagagattaaaaaattacagcgattgagagat
cagataaaaacatgggtggcctccaacgagatcaaagataaacggcagctagtcgagaac
cgcaagctcatcgagacgcaaatggagcggttcaaagtagtggagcgggaaacaaaaacc
aaggcctactccaaagaaggtttggggctggctcagaaggtggatccggctcagagggag
aaggaggagacggggcaatggctcacgaacacgatagacactctgaacatgcaggtcgat
cagtttgagagcgaggtggagtctctttcggttcaaacgcgaaagaagaaaggtgacaaa
gagaagcaagatcgcatcgacgagctcaagcgcttgatcgagaggcaccgcttccacatc
cgcatgctggagaccatcttgcggatgctggacaacgactcagtgccggtggacgccatt
cagaagatcaaagatgacgtggagtattacattgattcttcgcaagaccccgactttgag
gaaaacgaattcctctacgatgacttggacctggaagacatccctgcagcattagtggcc
acgtcgccatcggggcaaggcactatggaagatgagatgtacctccactccagcagcact
cccacttcaaccacctcgtcgtcgcccatccctccgtcgccagccacttgtgctgcggag
aactcagaggacgataagaaaaggggccgctcaacagacagtgaagttagtcagtcacct
gttaagaatggcacgccctccctactctcctccttctcctcctccaccacgtccggctcc
tcttcgtcctcctccctggtgtcaatggccagcgtagtgggaggcatcccagtggttccg
accagcagcggcttgataggaagcttcagcagcgccgtgcaacagcagcatcagcatctg
ccggtgcagcaacagccgcagcaagctcagccgcagaacccatctcaacagcagcagccc
ccactgtccaaaccctcagccccctcaaacagcacccccaatccgcccagcaacttgctg
ctcccggcgtcctctgccccctccgtgcccacgccgagcacggccatttcatctgccgcc
agttccttgtctcagccctcgtccgggtccgcttccgtgtccagtttgggactcggcatg
ggattgggtttaggcaaagggggcatcacggggaccagcggcgccaaccaaatgtcggct
ttaggcttgggggtccactcggcgccgctcagcaccatggcggggctcatctcggggtcg
acgcccaccccctacgcgcaggcggcggcatcagggggcttgggcttgagcggcggtagc
acgccggccagcatttcagtggagagcagcacttccatcatcaccacctcgggctccagc
ggcgtcaccaccaacggagcagccacggcgctcggcctgctgggctccggccacggctcg
ctgagcggcagcattctgggcctggtgtcgggccagaacgcctcctcagccacctctcag
gtgcctcccagttccgtcagcgcttccccaggggtggttggtatgatggggagcaacagc
ggcagcgtcgggattgtcgggggcgtgagcgccgccccggcccgaccgcccagcggactc
aagcagaatggaagcacaagttacagtgccgtcgtggccgaaagctccacggaatcagct
ctcagcacgccgagccagtctcaaagcagccagccgtcatccctcagttcctccgccagt
cagccgttggacaatgggcccagtttaatcagctccatcacgctcccgcccagctcgccg
tcgccctccttttcggacagcacgcccggtggagggagcctcctaaacgggccccactcc
tacacgcaggcctccgagggcctcaaggctcccgagcctcttatctccctgaaggccatg
gcggaacgggcggccctgggatcaggccttgacggagaaatccccaacctgcacctaaca
gagcgagacatcttctcatcgtccacggcgcccggcaccccggccgccccgcagccatcc
gtatccgaggtcagcatcccgccgtcgctcggggtctgtccgctggggcccacccccctc
cccaaagaccagctgtaccagcaggccatgcaggagtcggcgtggacgcacatgccgcac
ccctcagactcggagaggatcaggcaatacctaatgaggaacccgtgccccaccttgccc
ttccattatcagatgcctccgcaccactcagactccatcgagttctaccagcgactgtct
acagaaacactgtttttcatcttctactacctggagggcaccaaggctcagtatctgtca
gccaaggcgctgaaaaagcaatcatggaggtttcacaccaagtacatgatgtggttccag
aggcacgaggagcccaagactatcactgatgagttcgaacagggcacttacatttacttt
gactatgagaaatggggccagcgaaagaaggagggcttcacatttgagtacaggtacctg
gaagaccgagacctgcagtga
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