Syngnathus scovelli (Gulf pipefish): 125975531
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Entry
125975531 CDS
T08785
Symbol
wdtc1
Name
(RefSeq) WD and tetratricopeptide repeats protein 1 isoform X1
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sscv04121
]
125975531 (wdtc1)
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
125975531 (wdtc1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_IFT122_1st
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR3_2nd
Beta-prop_EML
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_NOL10_N
ANAPC4_WD40
Beta-prop_WDR75_1st
DSE1_N
WD40_RFWD3
Beta-prop_Aladin
TPR_19
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
PAC11
Beta-prop_EIPR1
ANAPC3
Beta-prop_VPS8
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Beta-prop_WDR41
NBCH_WD40
TPR_2
TPR_1
CFAP251_N
Beta-prop_WDR19_1st
TPR_BSK1_C
TPR_16
RMD1-3
TPR_17
ASA1
CFAP70_TPR_C
TPR_6
TPR_Slam
TPR_9
Barstar
Motif
Other DBs
NCBI-GeneID:
125975531
NCBI-ProteinID:
XP_049587212
LinkDB
All DBs
Position
9:4195278..4200759
Genome browser
AA seq
665 aa
AA seq
DB search
MNNVNITRDILHRQIQEKRTAGFQRSFHVTDPFIKRLGLEAELQGHTGCVNCLEWNENGD
LLASGSDDQHAIIWDPFKLKKLTTMHTGHSANIFSVKFLPHSGDRILITGAADSKVHVHD
LTVKETIHMFSDHTNRVKRIATAPMWPNTFWSAAEDGIIRQYDLRESGKHSQVLIDLTKL
CSQLVEAKCLAINPRDNNYMAVGANGPYVRLYDIRMIHNSSRKSVNQWKSSAVRTFLESH
MPVPDTAVQYYVAGHLPVKLMDYFNRLRVFVVTYVTFSPDGTELLVNMGGEQVYLFDLTH
KQKPYTLLLPQKCQSSPDVQIGKTTNGVSNGIRLPASHIEFTESKMQLSSSDLPPHLEKI
KQQANDAFARQHWTQAIQLYSLGIHHSGCNAVLYGNRAAAYMKRKWDGDHYDALKDCLKA
LTLNPEHLKAHFRLARCLFELKYMSEALQCLDDFKGKFPDQAHSSACDALDKDIKAFFTE
TESGGASSFRLQSTNQMEPITMDEFVFREQSLDYKHRYCGHCNTTTDIKEANFFGSKGQY
IVSGSDDGSFFIWEKETTNLVRIMQGDESIVNCLQPHPSYCFLASSGIDPVVRLWNPRPE
TESENGRVVEDMEGAAQANQRRMNADPLEVMLLNMGYRITGLRGVGPDGSDDESSSDGQA
QCRPS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaataacgtcaacatcacccgagatatcttgcataggcagatccaagaaaagagaaca
gcagggttccaaaggtccttccatgtgaccgaccccttcatcaagagacttggcctggag
gctgagcttcagggccacacgggctgtgtgaactgtttggaatggaatgaaaatggagat
ctgctggcttcgggctcggatgatcaacatgctattatctgggatcccttcaaactcaag
aagcttacaactatgcacacaggccattcagcaaatatattctctgttaagttcctccct
cactccggagacagaattttgattactggtgctgcggactcgaaggtccacgtgcatgac
ctgacggtgaaggaaaccatccatatgttttcggatcacaccaacagggtcaaacgcatc
gccacagcgcccatgtggcccaacaccttctggagcgctgcagaagatggcatcatcaga
caatatgacttacgggagagcggaaaacactcccaggtgctgatcgacctaacaaagttg
tgtagtcagctggtggaagccaaatgtttggctatcaatccacgcgacaacaattacatg
gccgtaggggccaacggtccctatgtacgtctctatgacattcggatgattcacaacagt
agcagaaaatctgtaaatcagtggaagtcatctgctgtgcgcacattcctcgaaagtcat
atgcccgtcccggacacggctgtgcagtattacgtcgcaggtcacctgccagtgaaatta
atggactattttaaccgcttgagggtctttgtggtcacttatgtcactttcagtccagat
ggaactgagttacttgtcaacatgggcggagaacaggtgtatttgtttgacttaacacac
aaacaaaagccatacacattgctgcttccacaaaagtgccagtcatcacctgatgtgcaa
attgggaagacgactaacggcgtctccaatggaattcgtttgcctgccagccatattgag
ttcaccgaaagcaagatgcaacttagctcctctgatcttcctccacatttggaaaagatt
aagcaacaagcaaatgatgcatttgcacggcagcattggacgcaggccatccaactgtat
agtttgggaattcatcattctggctgcaacgccgtgctctatggaaaccgggccgcggct
tacatgaagcggaaatgggatggagaccactatgacgcactgaaggattgcctgaaggca
ctgactctaaacccggaacatctgaaggctcatttcaggcttgcgcgttgtctctttgag
ctcaagtatatgtctgaagcgctgcagtgccttgacgatttcaaagggaagtttccagac
caagcgcacagcagtgcttgcgacgcattggataaagatatcaaggccttcttcacagag
acggaatcaggcggagcgagctctttccgattgcagtctacgaatcaaatggagcccatc
actatggatgagtttgtttttcgagagcagagcttggactacaaacacagatattgtggt
cactgcaacaccaccacagatattaaagaagccaacttcttcggaagcaaaggccagtac
atcgtcagcggctcagacgacggctccttctttatctgggaaaaggagacgacaaatttg
gttcgtatcatgcaaggggacgagtccatagtcaactgtttgcagcctcaccccagctac
tgcttcctggcctccagcggtattgaccccgtggtccgattatggaaccccagaccagag
accgagagtgaaaatggccgcgtggtagaagacatggaaggcgcagctcaggccaaccag
cggcgaatgaacgccgatccgctggaggttatgctgctcaatatgggctatcgcatcaca
ggactacgtggcgtgggcccagatggttctgacgacgagagcagctcagacggacaagcg
caatgtagaccgagctaa
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integrated database retrieval system
