Syngnathus scovelli (Gulf pipefish): 125976178
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Entry
125976178 CDS
T08785
Name
(RefSeq) UV excision repair protein RAD23 homolog B
KO
K10839
UV excision repair protein RAD23
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03420
Nucleotide excision repair
sscv04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125976178
09124 Replication and repair
03420 Nucleotide excision repair
125976178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
sscv03051
]
125976178
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125976178
Proteasome [BR:
sscv03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
125976178
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
125976178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPC-binding
UBA
ubiquitin
UBA_7
Rad60-SLD
Crinkler
Rad60-SLD_2
UBA_3
TBK1_ULD
Dsc3_N
Ubiquitin_5
Motif
Other DBs
NCBI-GeneID:
125976178
NCBI-ProteinID:
XP_049588112
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Position
10:complement(11320407..11325725)
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AA seq
440 aa
AA seq
DB search
MLTVTLRTLQQQTFKIHIDAEETVKVLKERIAEERGKDVFPAAGQKLIYAGKILNDDTAL
KEYNISEKNFVVLMVAKPKAAPASQTPPKPMPQSAPRPSSSSTSEPTCLSSSSLSSSVCI
PTQEAAATSSEVPPPPAPENTPTTSPEDASPPSAAAKDPPDAGTATTDIEKPDDAPTTEA
ESRASVQTLASSLADELGLLEEAASILVTGQAYENLVSEIMSMGYERQAVVSALRASYNN
PDRAVEYLLTGLPTAEAGGDTPALGDSPSGPPAIPAPVTQTPPPAEAERPLLGGITPSAQ
NPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQLGRDNPQLLQQITQHQERFVQMLNEPQG
GSAGGGGSDNSGNGGNGSSGEPRALSRANYIQVTPQEKEAIERLKALGFPEGLVIQAYFA
CEKNENLAANFLLQQAWDDE
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgctgacggtgacgctgaggacgctccagcagcagacgttcaaaattcacattgacgcc
gaggagacggtgaaagtgttgaaggagagaatcgcagaggagcgaggaaaagatgttttt
cccgccgcagggcaaaaactcatctatgcaggcaaaatcttgaacgacgacacggcactg
aaagaatacaacatcagtgagaagaactttgtggttctcatggttgccaagcccaaagca
gcccccgcctctcaaacccccccaaagccaatgccccaatccgcaccgcggccctcttcc
tcgtcaacgtcagaaccgacatgtttatcctcatcttcgctctcctcatccgtttgcatc
cccacacaagaagccgccgccacctcgtcggaagtgccgccgccgcccgccccggagaac
actcccaccacctctcccgaagatgcgtccccaccgtcggctgccgccaaagatcctcct
gatgccggaaccgccacaacggacatcgagaagcctgatgacgcgccaacgacggaagcg
gaaagtcgagcgtccgtccagacgttagcttccagcctggcggatgagctgggcctgctg
gaggaggcggcgtctattctcgtgacgggccaggcctacgaaaacctggtgtcggagatc
atgtccatgggctacgagcgccaggcggtggtgtcggcgctgagggccagctacaacaac
ccggaccgcgccgtagaatatttactcaccggcctccccactgccgaagccggcggtgat
acgccagcacttggggactctccgtcgggcccccctgccatcccggcccccgtgacgcag
acgccgccaccagcggaagcagagcgcccgttgctgggtggcatcactccgtcggcacag
aacccgctagagtttctgagaaaccagcctcagtttcagcagatgcgtcaaatcatccag
cagaacccatctctgctgcccgccctgctgcagcagctgggccgagacaacccgcagctc
ctacagcaaatcacacagcaccaagagcgatttgtccagatgctcaacgagcctcaaggt
ggcagcgcaggcggcggcggcagtgacaacagcggcaatggcggcaacggcagcagcggt
gaaccacgggcgctgtctcgtgccaactacatccaggtcacaccgcaggagaaagaggcc
attgagagattaaaagcgctgggcttccccgagggtttggtcatccaagcctattttgcc
tgcgagaagaacgaaaatttggccgccaacttcctgctgcagcaagcctgggatgacgag
tag
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