Syngnathus scovelli (Gulf pipefish): 125976685
Help
Entry
125976685 CDS
T08785
Symbol
usp4
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 4 isoform X1
KO
K11835
ubiquitin carboxyl-terminal hydrolase 4/11 [EC:
3.4.19.12
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sscv01002
]
125976685 (usp4)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sscv04121
]
125976685 (usp4)
Enzymes [BR:
sscv01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
125976685 (usp4)
Peptidases and inhibitors [BR:
sscv01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
125976685 (usp4)
Ubiquitin system [BR:
sscv04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
125976685 (usp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
Ubiquitin_3
DUSP
UCH_1
USP7_C2
USP7_ICP0_bdg
Motif
Other DBs
NCBI-GeneID:
125976685
NCBI-ProteinID:
XP_049588434
LinkDB
All DBs
Position
11:8444584..8452915
Genome browser
AA seq
1020 aa
AA seq
DB search
MKNAPLPEELLLVFQPAHSPVYTMAEGGGPDSGGSADSDSEVPVASTEKQKQTIGSLLKT
TLRKGDDWYLIDSRWFKQWKKYVGFDNWDMYHVGERSLYPGPIDNSGLFSDQDKQILKDH
LIDELDYVLVPTEAWNKLVSWYSCLGVQRPIVRKVVEHGMFVKHCKVEVYLLDLNLCEND
NMDLVVTRHFSKADTIDTIEKQMRTLFNIPREKETRLWNKYMSNTYEQLSKPDSTVQDAG
LFQGQVLVIERRNEDGTWPRQASHPKSSTTPSRTFTTSPKLSSSSSASISPAVINGNSSC
GAGYSLNNSATTGSSLGSYNSYSSSYNYRDSQSQSGLCGLSNLGNTCFMNSALQCLSNVS
PLTEYFLNDQYEAEINRGNPLGMRGEIAEAYADLVKQMWLSRSSSVAPRTFKTQVGRFAP
QFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLAQRDAEGRPDEIVATEAWKNHRLRND
SIIVDILHGLFKSTLVCPECSKVSVTFDPFCYLTLPLPMKIDRTMEVVFVRSDPQSRPTL
YRVVVHKLGTVAELCSALSRLCGVPPENMVVADVYNHRFHKIYRRDDGLNQIMDKDDIFV
YEVQEEDSETMNLPVYFRERHSKHAGSSSSNMLFGQPLVITVPRQNLIADVLYEKILQRI
GRYVKLPTSAGTESRASASAASASCSQVPECSTSSSTSLGGCGSPSSDGATCSASSSNGT
NHSGTCSETNGYDGEEEAMDHQVSPEPQNGQSEEDEEEASDLENGTKEDKAKTASLPAKL
FTFSVVNSYGTANISPLPCDGNVLKLNPHSTVAIDWDPEYRKMCYDDQEAEAYEKHDSML
QPPKKKATVALRECIELFTTMETLGAHDPWYCPTCKKHQRATKKFDLWSLPRILVVHLKR
FSYNRCWRDKLDTVVDFPIRDLNMSEFLCDPKAGPHTYDLVAVSNHYGGMGGGHYTAYGK
NKVDGKWYHFDDSSVSSSEEDQIVTKAAYVLFYQRREEEGQPSASLGGAPDAADDHMDLN
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacgccccgctcccagaagagcttcttctcgtctttcaaccggctcactcgcct
gtctacacgatggccgagggaggcggacccgactcgggcggctcggcggactctgattcg
gaggtgccagtcgcatccacggaaaagcaaaaacaaactatcggttcgctgctaaagacc
acgctcagaaaaggcgacgattggtatctcattgacagccgttggttcaaacagtggaag
aaatatgtgggtttcgacaactgggacatgtaccatgttggagagcgtagcctctatcca
ggacccattgacaactctggcttgttttcagaccaggacaaacagatcctgaaagaccac
cttatagatgagctggactatgtccttgtgcccactgaggcatggaataagcttgtcagc
tggtacagctgcctgggtgtccaacgacccattgtcaggaaggtagttgaacatggaatg
tttgtcaaacactgcaaggtggaggtctacctgctggacttgaacttatgtgagaatgat
aacatggatcttgtggttacacgccacttcagtaaagctgacaccattgataccatcgag
aaacagatgaggacactgttcaatattccacgtgaaaaggaaaccaggctctggaacaaa
tatatgagcaacacctatgagcaactgagcaagcctgacagcactgtacaggacgctggc
ctcttccaggggcaggtgcttgtgattgagcgcaggaatgaagatggaacgtggcccagg
caagcttcccatcccaaatccagcacaaccccatcgaggactttcaccacctcgcccaaa
ctctcctccagctcgtcggccagtatctcccccgccgtcatcaatggaaacagcagttgc
ggtgccggctactcgctcaacaacagcgccacgaccggcagcagtctggggtcttataat
tcttacagctcctcttacaactatagagattcccagtctcagtctggcctatgtggtctc
agtaatctaggcaacacgtgcttcatgaactctgctctccagtgcctgagcaacgtgtca
ccgctcaccgaatatttcctcaacgaccaatacgaggccgagattaaccgaggcaatccg
ctgggaatgcgtggcgagatcgcagaggcctacgctgatctagtgaagcaaatgtggctc
agccggagcagctctgtggccccgcgtaccttcaaaacccaagtggggcgctttgctccc
cagttttcgggctatcagcagcaggattcccaagagctgctagctttcttgcttgacggg
ctccacgaagatctgaaccgtgtgaagaagaagccttaccttgcccaaagggatgccgag
ggccgtcccgatgagatagttgcaacggaagcctggaaaaaccatcgcttacgcaacgac
tcgatcatcgtcgacatcttacacggccttttcaagtccactctggtgtgtccggagtgc
tccaaggtgtctgtgaccttcgaccccttctgctacctcactctgccgctgcccatgaag
atcgaccgaaccatggaggtcgtttttgtgcgatcggacccccagtccagacccaccttg
tatcgagttgtggttcacaaactgggcacggtggcggagttgtgcagcgccttgtccaga
ctttgcggagttcctccagaaaatatggtggtggctgatgtttataatcataggttccat
aaaatttacagaagggacgacggcctcaatcaaatcatggacaaagacgacatctttgtg
tatgaggtgcaggaggaggacagcgagacgatgaacctaccagtctatttcagggagcga
cattcgaaacacgccggaagctcctccagcaatatgctgtttggccagcctttagtcatc
accgtgccccggcaaaacctcatagcagacgttctttatgagaagatcctgcagaggatt
gggcgctatgtaaaactcccaacgagcgccgggactgaaagcagagcctcggcttcagcc
gcctccgccagctgcagtcaagttcctgaatgttccacatcatccagtaccagcttgggt
ggctgcggcagcccatcgtcggacggggccacctgcagcgccagctccagtaacggcacc
aaccactccggaacttgcagcgaaaccaacggctatgatggggaggaggaggccatggac
caccaggtgagtccagagccacagaacggccagtccgaggaggacgaagaggaggcatcg
gatttggaaaacggcacaaaagaggacaaagccaagacggcctcgcttccggccaagctc
ttcaccttcagcgtggtcaactcttatggaacggccaacatcagccctctgccttgtgac
gggaatgtcctcaaacttaatccacattccactgtggctatcgactgggaccccgaatac
aggaagatgtgttatgatgatcaggaagcagaggcatatgagaagcatgacagcatgctc
cagccccccaaaaagaaagccaccgtggctctaagagagtgcatcgagctcttcacgacc
atggagacactcggagctcatgatccatggtattgtcccacctgcaagaaacaccagcga
gccacaaaaaagtttgacctctggtcattgcctcgtatcctcgtcgttcatctgaagcgc
ttctcttacaacagatgctggagggacaaactggacacagtagtggattttcccatcaga
gatctgaacatgtcagagtttttatgtgaccccaaggctgggcctcacacgtatgacctc
gtcgctgtgtccaaccattacggaggaatgggaggaggacactacacggcgtacggtaag
aataaagtggacggaaagtggtatcactttgacgacagcagtgtgtcatcctcggaagag
gaccagattgtgactaaagcggcctatgtgctgttctatcagcgcagggaagaggaaggc
cagccttccgcctcgctgggaggagcccctgacgccgcagacgaccacatggatttaaat
tga
DBGET
integrated database retrieval system
