Syngnathus scovelli (Gulf pipefish): 125976873
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Entry
125976873 CDS
T08785
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125976873 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sscv03021
]
125976873 (smarcc2)
03036 Chromosome and associated proteins [BR:
sscv03036
]
125976873 (smarcc2)
Transcription machinery [BR:
sscv03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125976873 (smarcc2)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125976873 (smarcc2)
PBAF complex
125976873 (smarcc2)
GBAF(ncBAF) complex
125976873 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
125976873
NCBI-ProteinID:
XP_049588793
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All DBs
Position
11:7977090..7985852
Genome browser
AA seq
1044 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLTMKSFLDFKAGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSDIEPKLLGKLKDIIKRHQGSVTEDKSASSHIVVP
IPGSLEEEEWVRPVMKRDKQVLLHWGYFPDSYDTWIPANEVEASVEDAPSSEKPRKVHAK
WILDLDQYNEWMNEEDYEVGEGHPKRKRISAKTLTDEVTTADERRDKKPAGAKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYTKSKRGQREEEQEDLTKDLDDASPVPSSEDGNAAKTN
STKKDSDSTPVKGGADLDEQEDESMEVTGKEEEEGSSSVKGEPIKGADLHEDNVTEQTHH
IIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTS
TACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLVP
LQPKTSQTPTPQQIMSFPDKVKDKPADLQNFGLRTDMYSKKIGSAKSKSAASSMRDWTEQ
ETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEESYSSLGPLAYQPV
PFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAAR
VSGRQDPLYGLEGSGIAGTVLEEGERPDENNDDSKSDSQSNEEKKDTKDNKDAANEEDEK
VAENGKKEEERGREVEGEREVDKAESEMGDSEKEKDRKEGEEGQRESESEVEKKAKVERD
VGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETI
MDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQQHSQAGGPHPPQTAS
VSQGSASAQQSASAPQPAPSPAPSASAPPPASESHPPPGAHVSPPCPPGQPVTGHSGSAP
PHHESNTPRPAETLHPSALVPPPQ
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggcggtacggaagaaagacggcggcccgaatgtcaaatatttcgaagcgtccgataca
gtctctcagtttgataatgtgcgcgtctggctgggaaagaattacaaaaagtacatccaa
gcagagcccccaaccaacaagtctctgtctagtcttgtggtccagcttctccaattccaa
gaggaagtgtttggccgacatgtcagcaaccccccgctcaccaagctgactatgaaatct
tttctggacttcaaggccggaggcgctctttgccatatccttgcagctgcctacaagttc
aaaagtgaccaaggatggcgcagatttgactttcagaatccgtctaggatggaccgaaac
gtggagatgttcatgaccattgagaagtccttagtgcagaataactgcttgagtcgaccg
gtcatatacttgagctctgacatagagccaaaacttctgggaaagctgaaagacatcatc
aagagacatcagggctcagtgactgaagacaaaagcgccagctcccacattgttgttcca
attcctggcagcttggaagaagaggagtgggtgcgccctgtgatgaagagggacaagcaa
gttctccttcactggggatattttcctgacagttatgacacctggatcccagccaatgag
gttgaggcctctgtggaagatgcccccagctcagagaagccaaggaaggttcacgcaaag
tggattttagacctggaccagtataacgagtggatgaatgaggaggactacgaagtggga
gaaggccaccccaagaggaagaggatatcggccaaaactcttacggacgaggtgaccact
gcggatgagcggagagacaagaagcccgccggtgccaagaagaggaagcgctcgccgtca
ccgtctcccacaccgccaccgcaggagagcaagaagaagaacactaaaaaagggccgacg
accccgtacactaaatccaaacggggccaaagggaagaggaacaagaagatctcactaaa
gatttggatgacgcatcaccagttccatcatctgaagacggaaatgcagccaaaacaaat
agcaccaagaaggattcagattcaacaccagtcaagggaggagcagatttggacgagcag
gaggatgagtccatggaagtaacaggaaaggaggaggaagagggctcttcaagtgttaag
ggggaaccaatcaaaggcgcggaccttcacgaagacaatgtgacggagcagacgcatcac
atcatcataccaagctacgctgcctggtttgattacaacagtgttcatgctatcgagcgc
agagcccttccagagttcttcaatgggaagaataaatcgaaaaccccagagatctacctg
gcatacaggaacttcatgattgacacttaccgactaaaccctcaggagtacctcacctct
accgcctgccgcaggaacctggctggagatgtctgtgcaatcatgagagtccacgccttc
ctggagcagtggggcctaatcaactaccaggtggactcagagagccggcccacccccatg
ggccctccacccacttcccacttccacgtccttgcggacacgccgtccagtctggtaccc
ttacagcccaagacgtcacagactcccacgccccagcagataatgtccttcccggataaa
gtgaaagataaaccagccgacctgcagaactttgggcttcggactgacatgtacagcaag
aagatcggctccgccaagagcaagagtgcagcaagttctatgagggattggacagagcag
gaaacactattactgcttgagggattggagatgtacaaggacgactggaacaaggtgtcg
gagcatgtcggcagccgcacgcaggacgagtgcatccttcacttccttcgcctgcccatc
gaagacccctatctggaggaaagctactcgtccctgggaccgctggcctatcagccggtg
cctttcagccaagcaggaaaccccgtaatgagcacagtggcgttcctcgcctcggtagtg
gaccctcgcgtggcctcggcagcggctaaatctgctctggaggagttctctcgtatgaag
gaggaagttcccgcggccctggttgaggctcacgtgcggcgggtggaggaggcggcgagg
gtcagtggacgacaggaccctctttacggcctcgagggtagcggcattgccggcactgtc
ttggaggaaggcgagagaccagatgagaacaatgacgacagcaagagtgacagccagtca
aatgaggagaagaaggataccaaggacaacaaagatgcagcgaatgaggaagatgagaaa
gtagcagaaaatgggaagaaagaagaggagagaggaagagaagttgaaggcgagagggag
gtggacaaagctgagtcggagatgggtgacagcgagaaggagaaggatagaaaagaaggt
gaggaaggccaaagagaatctgaaagtgaagtcgaaaagaaggcaaaggtggagcgggac
gtgggcgagggcaacctggccactgccgctgcgtccgcgctggcggcagcggccgtcaaa
gcgaagcacttggctgctgtggaggagaggaagatcaaatctctggtggcactgctggtg
gaaacccaaatgaagaaactggagatcaaactgcgccactttgaggaactggaaaccatc
atggatcgggagagggaggctctggagtaccagcgacagcagctcctggccgaccgtcag
tccttccacatggagcagctcaagtacgccgagatgagagctcgccagcagcacttccag
cagatccagcatcagcagcacagccaagccgggggtcctcatcctccccagaccgcttcg
gtctcccaaggttcggcctcggctcagcaatccgccagcgcgccgcagccggcccccagc
cccgcgccgtcggcctcagcgccaccgccggcctcggagtcccatccgcctccgggcgcc
cacgtgtcgcccccgtgcccccccggccagcctgtgactggccactccggcagcgcgcct
ccacaccacgaatccaacactcctcgacccgccgaaacacttcacccctctgctctggtt
ccacccccacagtaa
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