Syngnathus scovelli (Gulf pipefish): 125976894
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Entry
125976894 CDS
T08785
Symbol
ccdc174
Name
(RefSeq) coiled-coil domain-containing protein 174
KO
K25178
coiled-coil domain-containing protein 174
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125976894 (ccdc174)
03041 Spliceosome [BR:
sscv03041
]
125976894 (ccdc174)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125976894 (ccdc174)
Spliceosome [BR:
sscv03041
]
Complex C
Other components
EJC/TREX
125976894 (ccdc174)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4078
Motif
Other DBs
NCBI-GeneID:
125976894
NCBI-ProteinID:
XP_049588832
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All DBs
Position
11:8132916..8136074
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AA seq
577 aa
AA seq
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MDKKKRPFDVTASSLVDLKAELYRKQEQFKQQRLGQESGEIGHKPKPKVKKPNVFVKQNA
GVSARAEKDAEEVAEEQRTLDNAKSKLEQKAKLYEQMTKGNFPDEETEGLYLVDFAQKII
DTRRETQTQRIADIEEEERARLSPVPPPENPDEEWVDFVDTLGRSRRCMKKDLPDFLKMD
HDIKGNGPKVSADLLSEDMRRELQRQEWEREEEEAMKKPVGPVHYETIRAQEARELGVGY
FAFSHDEEHRRKQRETLDMLRDQTTDQRSKRERLKEKKKAILQARLAKIKQRKLKAKGGV
EEQLEEENEDEDMAAPSPPPQDPPEVSRVKKVEVEIQERRDTKPGVPHVREWDRGKESMF
SEWKSRRQSERDSEFAPPSTYFAEQWRPRPAKTQIPEKKTPQMSFLGTQSPGGTTENPRP
PPAAAPSQTATPQNPPVQPQPPPPCQPTPAAAPSQTAPPQNPPMQPPPPGTPVNLQYPLP
PFYPPFAPPPFICPPYRFPNIPAHYQNQYPPPMLSQFPPQVQPQPTVPNQPHLPPKPTEP
GQPEAPPQPVEPDQPQQPPQGSSQSLDDMLSFYRSIT
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaaagaagagaccgtttgacgtgactgcttcttcgctagtggatcttaaagcc
gagctatacagaaagcaggagcaattcaaacagcagagacttggccaagaaagtggcgag
attggtcacaaaccaaaacccaaagttaagaaaccaaatgtatttgtcaagcaaaacgct
ggagtttcggcaagagctgaaaaagatgcagaagaggtggcagaggagcagagaactctg
gataatgcaaagagtaagttagagcaaaaagccaaactctacgaacagatgaccaaagga
aatttcccagatgaagaaacagaggggttgtacctggtggattttgcgcagaagattatt
gacacaagaagagaaacgcaaacacagaggatcgctgacattgaggaggaggaaagagcc
agattgtcccctgttcctcctccggagaacccagatgaagaatgggtggactttgtggac
actttgggacgatcgcgaaggtgcatgaaaaaagacttgccagattttctgaaaatggac
catgacatcaaaggaaatggtccaaaagtctctgctgacttgctgtcagaggacatgcgc
agagagctgcagaggcaagagtgggagcgagaagaagaggaagccatgaagaagcctgtt
gggcctgtccactatgagaccatcagggctcaagaggctcgggagctcggcgtgggctac
tttgccttctcgcacgatgaggaacatcgcagaaagcagagggagactctggacatgctc
agggaccaaacgactgatcagcggagtaagagagagcgactgaaagagaaaaagaaggcc
atcctgcaagcccggctggccaaaataaagcagaggaagctgaaggccaaggggggtgtt
gaagagcagctagaggaggagaatgaagatgaggacatggcagcaccctcgcctccgcct
caggatccaccagaggtcagcagagtgaagaaagtggaagtggagattcaggaacgaagg
gacaccaaacctggtgtcccgcatgttcgagagtgggacagaggcaaagaatccatgttc
agtgagtggaaaagccggcgtcagtcagagagagattccgagtttgcgcctccctccaca
tactttgctgagcaatggcgcccgagaccagcaaagacacaaattccagagaagaaaact
ccccaaatgtccttcctggggacacaaagcccaggtgggaccactgagaatccacgccct
ccccctgcggcggccccctctcagactgccactccacaaaaccccccagtgcagccacag
cctccgccaccatgccagcctacccccgcggcggccccctcacagactgctcctccacaa
aaccccccaatgcagccaccgcctccaggaacccctgtcaacctccagtacccacttcct
cctttctaccccccatttgctcctccaccctttatctgcccaccttaccgatttcctaac
atccctgcacactaccaaaaccaatacccacccccgatgctgagccaattcccgccccag
gtgcaacctcagcctactgtgcccaaccagccccacctgccacccaaacccacagagccc
ggccagcctgaagcacccccccaaccagtagagcctgaccaacctcagcagccacctcaa
ggctcctcacaaagtttggacgacatgctgtccttctacaggagtatcacttga
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