Syngnathus scovelli (Gulf pipefish): 125976907
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Entry
125976907 CDS
T08785
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04510
Focal adhesion
sscv04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125976907 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125976907 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sscv00536
]
125976907 (col2a1b)
Glycosaminoglycan binding proteins [BR:
sscv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125976907 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
125976907
NCBI-ProteinID:
XP_049588858
LinkDB
All DBs
Position
11:complement(11015474..11042508)
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AA seq
1491 aa
AA seq
DB search
MVSFLDSRTLLLLAAAQVCLLTLVRCQANNQEDALSCLQDGQRYTDKDVWKPEPCRICVC
DTGTILCDEIVCEELRGCPNPEIPFGECCPICAADPSPPIGTPGVKGQKGEPGDITDVVG
PRGLPGPMGPPGEQGPRGPRGDKGGKGTAGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMAGGFDEKAGGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGSSGEAGEPGQS
GPMGPRGPPGPSGKPGDDGEAGKSGKPGERGPSGPQGARGFPGTPGLPGIKGHRGYPGLD
GAKGETGAVGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPP
GPVGPSGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIP
GSKGSSGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGITGFKGEAGPKGEFGPA
GIQGAPGPQGEEGKRGPRGEPGAAGPIGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPA
GASGPKGASGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGGPGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEPGKSGEKGLLGAHGLRGLPGKDGETGAAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGTTGPRGERGFPGERGAAGSQGLQ
GPRGLPGTPGTDGPKGAIGPAGGAGAQGPPGLQGMPGERGGSGIPGPKGDRGDIGEKGPE
GAPGKDGGRGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPVGFA
GPPGSDGQPGLKGEMGESGQKGDAGAPGPQGPSGSPGPAGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGTAGAPGEK
GDPGEDGPPGALGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSPGGSGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGSAGIKGDRGNTGPAGAPGAPGAPGST
GSVGPTGKQGDRGEAGAQGPAGPPGPAGARGMPGPQGPRGDKGEGGESGERGQKGHRGFT
GLQGLPGPPGQSGDQGATGPAGPSGQRGPPGPTGPSGKEGSNGMPGPIGPPGPRGRGGET
GPSGPPGNPGPPGLPGPPGPGIDMSAFAGLGHTEKAPDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGDYWIDPNQGCTVDAIKVFCN
METGESCVRSKPSSIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDNLAPNTAAIQMT
FLRLLSTEASQNVTYHCKNSVAYMDAAAGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCTRHTGKWGKTVLEYRSQKTSRLPIVDIAPMDIGGADQEFGVEVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atggtgagcttcctggattcaaggactctactgctactcgcagccgcacaagtgtgctta
ttaacccttgtcagatgtcaggccaacaatcaggaggatgcccttagctgcttgcaggac
ggccaacgctataccgacaaggatgtgtggaagcccgagccgtgtcgcatctgcgtgtgc
gacaccgggaccatcctgtgcgacgaaatagtctgcgaggagctcagaggctgccccaat
cctgaaatcccattcggagagtgttgccccatctgcgccgctgacccttcgccgcccatt
ggaacacctggagttaagggccaaaaaggtgaacctggagatattaccgatgtcgtagga
ccaagaggactccctggccctatggggccaccaggggagcagggaccacgtggaccaaga
ggagacaagggagggaagggaacagccggtccccgtggtagagatggcgagcctggcacc
cctggaaaccctggcccacctggaccaccaggacctaatgggccccccggccttggcgga
aattttgctgctcaaatggcaggtggcttcgacgagaaggccggcggtggcgctcagatg
ggcgtgatgcaaggacccatgggcccaatgggtccccgaggaccacctggacccactgga
tctcctggccctcaaggattccaaggcagctcgggagaggctggagagcccggacaatct
ggtcccatgggaccccgcggaccaccgggaccttctggaaaacctggagatgatggtgaa
gctggaaaatctggaaaaccaggcgaacgtggaccttctggacctcagggagctcgaggt
ttccccggaacacccggcctgcctggcatcaaaggacatcgaggttaccctggtcttgat
ggtgcaaagggagagaccggtgctgttgggtcaaagggagagtctggtgctcctggagag
aatggagctcctggaccaatgggaccccgaggtctgcccggagagagaggtcgtcctgga
cccagtggggttgctggtgcccgcggtaatgatggtttgcctggccctgctggtcccccg
ggtccggtcggtccttctggagctccgggtttccctggctcccctggtgcaaagggagaa
gctggtcccactggtgctcgtgggcccgagggtgcacagggaccccgtggagagtccggc
acacctggctcatctggaccttctggcgcttctggaaaccccggtactgatggtatccct
ggatctaaaggatcatctggtgctcccggtatcgcaggcgctcccggtttccccggacct
cgcgggcctcccgggcctcagggagcgaccggacctctcgggccaaaaggaacatctgga
gatccaggtatcacaggcttcaagggagaggccggacctaaaggagaatttggaccagct
ggaatccaaggagctcccggtccacaaggagaagagggcaagagaggaccaagaggtgaa
cccggtgctgctggaccaatcggacctcccggggagagaggctctcctggcaaccgcggt
ttcccaggtcaagacggtctggcaggtcccaagggtgcccccggtgagcgtggacccgca
ggtgccagtggtcccaaaggtgctagcggtgacccgggccgtcccggagagtccggtctg
cccggtgccagaggtcttactggacgtcccggtgatgccggtccccaaggcaaagttgga
ccttctggaggtcctggtgaagacggccgaccaggaccccccggcccacagggtgcccgt
gggcagcctggcgtcatgggattccccggacccaaaggagcaactggcgagcctggcaaa
tctggcgagaagggattgcttggagctcatggcctgagaggtctgcctggtaaagatggt
gaaactggcgccgccggaccccccggccctgctggtcccgctggcgagagaggagaacaa
gggcagcctggtccctctggtttccagggtctccccggtccccctggtccccccggtgag
ggaggaaagcctggagatcagggtgttccaggagagggcggagctgccggtaccactgga
cccaggggagagcgaggcttccccggagagagaggagctgccggttctcagggtctgcag
ggacctcgaggtctgcccggaacccctggaactgacggacccaagggagccatcggaccc
gctggaggcgccggagcgcagggacctcccggtctacagggtatgcccggagagagaggg
ggctctggtattcctggacccaaaggagacagaggtgacattggagagaaaggacctgaa
ggtgcacctggaaaagatggcggcaggggtcttactggtcccattggtcctcctggtcct
ggcggtcccaatggtgaaaagggtgaatccggtcctgctggtccttccggagctcctggt
acccgtggtgcccctggtgacagaggtgagactggacctcctgggcctgttggatttgct
ggaccccctggctctgatggacaacctggacttaagggagagatgggagagtctggccag
aagggtgacgctggcgcaccaggaccacaaggaccatctggttctcccgggccagccggc
cccactggtgtttctggacctaaaggtgcccgtggagctcagggacctcccggtgctacc
ggtttccctggagccgccggaagagtcggacctcccggtcccaatggcaatcctggacct
gctggtcccgccggccccccgggcaaagacggccccaagggtgtgaggggagacggtggc
ccccctggcagacagggtgatgctggactccgtggtactgccggggctcctggagagaag
ggagaccctggagaggatggcccccctggtgctctcggtccctctggccctcaaggtttg
gccggacagcgtggtattgtgggtctgcctggacagcgtggcgagagaggtttccccggc
ctgcccggaccctctggtgaacctggaaagcaaggatctcccggcggcagcggagaccga
ggaccccccggacctgtcggaccgcccggactcaccggacctgcaggagagccaggcaga
gagggcaaccctggatctgatggacctcctggtagagatggttctgctggaatcaagggt
gaccgcggtaacaccggtcccgctggcgctcctggtgctccaggtgccccaggctccaca
ggctcggtcggtcccaccggtaaacagggagacagaggagaagctggtgcacaaggaccc
gccggaccgccgggacctgccggtgcccgaggaatgccaggaccccaaggacctcgtggt
gataagggtgaaggcggagagtctggcgaaagaggacagaagggacaccggggcttcacc
ggtctgcagggactgcccggacctccgggtcaatctggagaccaaggtgctactggacct
gctggaccatcaggacaaagaggaccacccggacctacagggcccagtggaaaggaaggt
tcaaatggtatgcccggacctatcggaccccccggaccccgcggtcgcggtggagagaca
ggtccttcaggtcctcctggaaaccccggcccccccggtcttcccggaccccccggcccc
ggtattgacatgtcagcctttgccggcctgggtcacacggagaaggctcccgatcctctc
aggtacatgagagccgaccaggcctccggaaacctgcgtcaacacgacgctgaggtggac
gccacgctcaagtccctcaacaaccagatcgagaacatccgtagtcccgagggctccaag
aaaaacccagctcgcacctgtagggacctcaagctctgccatcctgactggaagagcgga
gattactggatcgaccccaaccagggctgcaccgtagacgccatcaaggtcttctgcaac
atggagacaggcgagtcctgcgtccgctccaaaccatccagcatcccgcgcaagaactgg
tggtccagcaagagcaaggaccgcaagcacgtgtggttcggagagaccatgaacggagga
ttccatttcagctatggcgacgacaacctggcgcctaacacggctgccatccagatgact
ttcctgcgcctgctgtccaccgaggcgtcgcagaacgtcacgtaccactgtaagaacagt
gtggcctacatggacgcagccgccggcaacctgaagaaggccgtgctgctgcagggctcc
aacgatgttgagatccgcgccgagggcaacagccgcttcacctacagcgtcatggaggac
ggctgcacgagacacacaggcaagtggggcaagacggtcctggagtaccggtcgcagaag
acttcccgtcttcccatcgtggacatcgcccccatggacatcggtggcgctgatcaggag
tttggagtggaagtgggtgccgtgtgcttcttgtaa
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