Syngnathus scovelli (Gulf pipefish): 125977037
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Entry
125977037 CDS
T08785
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger and BTB domain-containing protein 40-like
KO
K10512
zinc finger and BTB domain-containing protein 40
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125977037
04121 Ubiquitin system [BR:
sscv04121
]
125977037
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Zinc finger
Cys2His2 BTB-ZF factors
125977037
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
125977037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
zf-H2C2_2
zf-C2H2_4
BTB
zf-C2H2_15
Zf-C2H2_ZNF451_C
zf-C2H2_6
zf-C2H2_jaz
zf-C2H2_ZNF462_1st
zf-C2H2_5
zf_C2H2_ZHX
zf-C2H2_11
Motif
Other DBs
NCBI-GeneID:
125977037
NCBI-ProteinID:
XP_049589118
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Position
11:279179..284664
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AA seq
792 aa
AA seq
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MDHLNVLRLEEDSSSPEQINKMLQLPNYSSQLMQQLWALRQEGHFCDCTVLVGDEPHRAH
KVVLAASSMLFRSLLNFSDTVSIDTTLVSSQEFTCLLDMSPMNKLQSPNPDVSDASAESG
TQVKDELETNAGQDASEIAKEPTGTEESIATATAVEDDDDARASKTTSGLERSSQLTERL
ALVPDVVQLLSQAANRCLEKLELQLVCECCKEADPRSVVTKLLGEVEKGLVSEQSLLSLL
RSAQREAPSSFPASLLSQLEEMDNTQEPDGHQTETSSEMENSSGQNQVRIKSGQSSTEEP
GKDEDSSSSKSYRCRWCKKSFSYKCRVTAHMKRCPMSEDCQLQCPQCPAKLLNKRALQRH
LSQAHPAAAGDKKKKKKVACDLCGRTFAHPSGMIYHKRTEHYEEKPYACETCGAKFPATS
SLKNHMRLHTGEKPYRCKHCDMSFRVAAALAYHTKKKHSEGKMYACQYCKAVFAQSIELT
RHVRTHTGDKPYVCRECGKGHSQASGLTVHLQTFHNMSQPLSCQKCSLSFQTLEEHQKHI
EELHVNPMHKCPTCRKVFSSAALLDNHKSIHTGVKPYVCNLCNKSYQQLSGLWYHNRTNH
PQVIGNQTAQQVKTLVQCDVCSKFFPCVSILAKHIEAEHEDTAASTLHCVHCQVVLAGGA
AELQEHNCSRHTKGAAHGVVCPLCTLVSGSQTELQEHLLSCHVEAQQTQVAEEASSAAVA
AAHTVITVHQQEGEVPQSANAAEEQQSVSQRVFVAVAGGGEGDAPTEVVEVNMYDLLNNS
VTFICEGKPSDI
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggatcatttgaatgtgttaaggctagaggaagactcctcctctccggagcagataaac
aaaatgctccaactccctaactacagcagccagttgatgcagcaactgtgggccctgcga
caagagggtcacttttgtgactgcactgttctcgtgggcgacgagcctcatcgtgcacat
aaagtagtgctggcagcttccagcatgctcttcaggtcgctgctgaatttttcggacact
gtctccatcgacaccactttggtttcctcacaggagtttacctgtcttctggacatgagc
ccgatgaacaaactccagagcccaaaccctgacgtttcggacgcttcggctgaaagtggg
acccaggtgaaggacgagttggagacaaatgcaggtcaagatgcgagtgaaattgcaaag
gagcctacagggacagaagaaagcatagccacagcaactgctgtcgaagacgacgacgac
gcgagagccagcaaaactactagcggcttggagcgttcttctcagctgaccgagcgactc
gcccttgtgccggatgttgttcagcttttgagccaagcagccaacaggtgtctggagaag
ctggagctccagttagtttgcgagtgctgtaaagaagccgacccgcgctcagtcgtgact
aagctgttgggggaagtggagaagggactcgtcagtgagcaaagtctcctgagcctgctc
cgcagcgcccaacgggaggcgccctcctccttccccgcgtcgttgctctctcagctggag
gagatggacaatacgcaggagccggatggacaccagactgaaaccagctcagaaatggag
aacagcagcggtcaaaatcaagtccgaatcaagtcggggcaaagcagcacggaagagccc
gggaaagacgaagactcgtcgtcctccaagtcttaccgctgtcgctggtgtaagaagagt
ttctcctacaagtgccgagtgacggcccatatgaagcgctgccccatgtccgaggattgt
cagctgcagtgtccgcaatgccctgccaagctgctcaacaagcgggctttacagcgccat
ttgagccaggctcacccggccgctgcgggagacaagaagaagaagaagaaggtagcctgt
gacctctgcgggcggacctttgcacacccttcgggtatgatctaccacaagcggaccgag
cattacgaggagaagccgtacgcctgcgagacgtgcggcgccaagtttcccgccacctcc
tctttgaaaaaccacatgcggctccacacgggagagaagccctaccgctgcaaacactgc
gacatgagcttccgagtggctgccgccttggcctaccacaccaagaagaagcattcggag
ggcaagatgtacgcgtgtcagtactgcaaggccgtgtttgctcagtccattgagctgacg
cggcacgtgcggacgcacacgggcgataagccctacgtgtgtcgggaatgtggaaaaggc
cacagccaagccagtggcttgactgtccacttgcagaccttccacaacatgtcgcagccc
ctcagctgtcagaagtgttccctcagcttccagactttggaggagcatcagaagcacatc
gaggagctccacgtcaaccccatgcacaagtgtcccacgtgccgcaaagttttcagcagc
gccgcattgctggacaatcacaagtccattcacactggagtcaagccctatgtctgcaac
ctgtgcaataaatcttaccagcaactgtcaggcctgtggtaccataacaggaccaaccac
cctcaggtcatcggcaaccaaacggcgcagcaagtgaagaccctggttcagtgtgacgtc
tgctcaaagttcttcccctgtgtctccatcctggccaaacacatagaagctgaacatgaa
gacacggcggcatccaccttgcactgcgtccactgtcaagtggtattggcggggggggcc
gcggaattgcaggagcacaactgcagccggcacacaaagggtgccgcccatggagtcgtc
tgccccctttgcactctggtcagcggctcccagacggagctgcaggagcatctcctctcc
tgccacgtggaagcccagcagacacaggttgctgaggaggcctccagcgcagcggtggcg
gcggcgcacactgtgatcacggtgcaccaacaagaaggcgaggtgccgcagtcggccaac
gctgctgaggaacagcagtctgtgagccagcgggtgtttgtggctgtggcaggcggaggg
gaaggcgacgccccgaccgaggtggtggaggtcaacatgtatgatctcttgaacaattcc
gtcacgttcatctgtgaaggcaaaccgtcggatatttag
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