Syngnathus scovelli (Gulf pipefish): 125977053
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Entry
125977053 CDS
T08785
Name
(RefSeq) probable ATP-dependent RNA helicase DDX41
KO
K13116
ATP-dependent RNA helicase DDX41 [EC:
5.6.2.7
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
125977053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125977053
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125977053
Spliceosome [BR:
sscv03041
]
Complex C
Other components
Complex C specific factors
125977053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
zf-CCHC
Utp25_C
SecA_DEAD
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
125977053
NCBI-ProteinID:
XP_049589155
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All DBs
Position
1:7271235..7278437
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AA seq
614 aa
AA seq
DB search
MEDDNRLKKRSYGEDQGSGAEESEDEDYVPYVPVKIRKQQMVQKMLRLRGKAVDEEHRDS
GEEQRDEDEGLGPRSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMS
VKEMAKGIIYDDPIKTSWKAPRYVLHMPETRNERVRKKFHILVDGDGIPPPIKSFREMKL
PSAILKGLKKKGIVHPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFTLPIIMFALEQEK
RLPFFKREGPYGLIICPSRELARQTHGIIEYYCKLLEEEGAPQMRTALCIGGMSVKEQME
VVKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEEDIRTIFSYFKGQ
RQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEAKTVYLLECL
QKTTPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFKEGKKDVLVA
TDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGQTGIATTFINKGCDESVLMDL
KALLIEAKQKVPPVLQVLQSGDETMLDIGGERGCTFCGGLGHRITDCPKLEAMQTKQVTN
IGRKDYLAHSSMDF
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggaagatgataatcgacttaaaaagaggtcttatggggaagatcaaggctctggggct
gaggagtcagaggatgaagattatgttccttacgttcctgtcaaaatccgaaagcaacag
atggttcagaagatgctgcgtttgcgtggtaaagcagtggatgaagagcatagagacagt
ggggaggagcagagggatgaagacgaagggctcggtccacgttccaacgtcagtctcctt
gaccagcaccaacatctcaaggaaaaagcagaagcacgcaaagagtcagccaaggagaag
caactgaaagaggaagagaagattttagaaagtgttgcagaaggcagagcattgatgtcc
gtgaaggaaatggccaagggtatcatttatgatgatccaatcaaaacaagctggaaggct
ccgcggtatgtccttcatatgccggagactagaaatgaacgtgtgaggaagaagtttcac
atcctggttgatggagacggcatccctcccccaatcaaaagcttcagggagatgaagctt
ccgtcagcaattctaaaaggtttgaagaagaaaggaattgtacatccaacgccgattcaa
attcaaggaatcccaacagttctatcaggtcgcgatatgatcggcatcgcctttactgga
tcgggaaaaaccttggtcttcactttgcccatcatcatgttcgcccttgagcaagagaag
cgtctgcccttttttaaaagagagggaccatatggactcattatctgtccttcaagagag
ctggcccgacagacacacggcatcattgaatattactgcaaattgctggaggaggaggga
gcccctcagatgcggacggccctctgcattggagggatgtccgtcaaggagcaaatggaa
gttgtgaaacatggtgtgcacatgatggtcgccactcccgggcgtctcatggacttgtta
cagaagaagatggtgagtctggacatatgtcgctacctggccttggatgaggcagacagg
atgattgacatgggctttgaggaggacatcaggaccattttttcttattttaagggacaa
aggcaaaccctgcttttcagcgccaccatgcccaagaaaatccagaattttgccaaaagc
gctttggtcaaacccatcacaattaacgtaggcagagcgggtgctgccagcttggatgtc
atccaggaagtggaatacgtcaaagaggaggctaagacggtgtatctgctcgagtgtctt
cagaaaacaacaccgcccgtgttgatatttgctgagaaaaaggctgacgttgatgccatc
catgagtatttgctgctgaaaggtgtggaagctgtggccattcatggaggaaaagatcag
gaggaaagaacaaaagccatagaagcatttaaggaaggaaagaaggacgtcctcgtcgcc
acagatgtggcctccaagggtctcgatttcccggcaatccagcatgtcgtcaactacgac
atgcccgaggagattgaaaactatgtccatagaattggaagaacagggcgatctggtcag
actggtattgccacaacattcatcaataaaggctgtgatgagtccgtgttgatggatctg
aaggccctgcttattgaagccaaacaaaaagttcctccggttctccaggtgctccagtca
ggagacgaaaccatgctggatatcggaggagagagaggctgtacattttgtggtggtctt
ggtcatcgtattacagactgtcccaagttggaggcaatgcaaaccaagcaggttaccaac
atcgggaggaaggactatctggctcacagctcaatggacttctaa
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