Syngnathus scovelli (Gulf pipefish): 125977070
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Entry
125977070 CDS
T08785
Name
(RefSeq) probable nuclear hormone receptor HR38
KO
K04465
nuclear receptor subfamily 4 group A member 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04010
MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
125977070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125977070
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
sscv03310
]
125977070
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Zinc finger
Cys4 nerve growth factor IB-like
125977070
Nuclear receptors [BR:
sscv03310
]
4. Nerve growth factor IB like
4A. Nerve growth factor IB like receptor
125977070
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
125977070
NCBI-ProteinID:
XP_049589195
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Position
11:6780112..6786248
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AA seq
576 aa
AA seq
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MPCVQTQHVSLTHDTHFGSDLLNPDPGAKLAMDIGSQKEQLSTSLLPSINTLVGNGYIGE
FDAFSCKIPASASTSTLSFGQSSVAESLDCQMQNQAYKLDDLQVYGCYPGSFTLSCIDET
LSSCGSDYYGSPGYPAASPPATGFQTLCAPLWDSTFSAYNSAPQADKQPSFFPFSPAPEQ
HSPVLPHQDAPFGQDDAFFMSPQQQVSSLLCPVMSIEHGARLVEGSAKIHNPALSEGRCA
VCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKDCPVDKRRRNRCQFCRFQKCL
TVGMVKEVVRTDSLKGRRGRLPSKPKTVAEASSTTPSVNIISLLVRAHLDSNPSIGKLDY
SKYQETVDKVSEKEDAGDIQQFYDLLTGSLEVIKTWAETIPAFSDFCTEDQQLLLESAFV
ELFILRLAYRSNPEKHKLIFCNGVVLHRLQCVRSFGDWIDSIMDFSQSLHRMNLDVSLFA
CLSALVIITDRHGLKEPKRVEDFQTNLISSLRAHVNGNRSEASRTQPSYLSRLLGKLPDL
RTLCTQGLQRIFYLKLENRVPPPPIVEKIFMDILPF
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgccctgtgtacaaacgcagcacgtatccctgacccatgacacccactttggctctgac
ctcttaaaccctgacccgggcgccaagttggcgatggacatcggtagccagaaggagcag
ctgtccacgtcgttgttacccagcatcaataccttagtgggaaacggctacataggggag
tttgatgctttttcctgcaagattcccgcctcggcttccacgtctacactatcgtttggc
cagagttcggtcgctgaaagtttggactgccaaatgcagaaccaagcctataaactggat
gacctccaagtgtatggctgttacccaggctcatttacactcagttgcatcgatgagact
ctgtcgtcctgcggctctgactactacggcagtccaggctatcctgccgcttccccccca
gcaacgggctttcaaacactctgtgcacctctatgggattccacttttagcgcctacaac
tcagcacctcaagctgataaacagccctcgtttttccccttcagccccgcaccggagcag
cactctcccgtgctgccccaccaggatgctccattcggtcaggacgatgcttttttcatg
tctcctcagcagcaagtgtcttcgctcctttgccccgttatgtctatagaacacggcgcc
aggctcgtggagggctctgccaaaatccacaacccggctctgagcgagggccgctgtgcc
gtgtgcggagacaatgcatcctgtcagcactacggagtccgtacttgtgaaggctgcaaa
ggtttcttcaaacgaactgtgcagaaaaatgcaaaatatgtttgcttggctaacaaagac
tgcccagtggacaagaggaggaggaaccgctgtcagttctgccgtttccaaaaatgcctt
acagtgggaatggttaaagaagttgttcggacagacagcctgaaaggtcgccgagggcgt
ctgccatccaagcccaagacggtagccgaggcttcctccaccacccccagtgtcaacatc
atttccttgctagtacgtgcgcatttagattccaacccgagtatcggcaagcttgactac
tccaagtaccaggaaaccgtggacaaggtgtcggagaaggaggatgctggtgacatccag
cagttctatgacctactaaccggctcattggaggtcataaaaacctgggctgaaaccatc
ccggcattctctgacttttgcacagaggaccagcagctacttcttgagtctgcctttgtt
gagttgttcatcctacgcctggcatacagatccaatccagaaaagcacaaactgatcttc
tgtaacggcgtggtcctccaccgactgcagtgtgttcgtagtttcggggactggatcgac
tccatcatggatttctcccagagcctccaccgaatgaacttagacgtctctctgtttgcg
tgcctttcagccctcgtcatcatcaccgatcggcacggcctcaaagaacccaaacgtgtt
gaagacttccagaccaacctcatctcatctttaagggcgcacgtgaatggaaaccgatcg
gaagcgagccgaacccaacccagttatctctctcggcttctgggtaagctcccggatctc
aggactctttgcacacagggcctgcagcgcatcttctacctaaaactggagaaccgtgtc
ccccctccacctattgtggagaaaatctttatggatatcctcccattctga
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