Syngnathus scovelli (Gulf pipefish): 125977207
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Entry
125977207 CDS
T08785
Symbol
hcfc1a
Name
(RefSeq) host cell factor 1a
KO
K14966
host cell factor 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03083
Polycomb repressive complex
sscv04980
Cobalamin transport and metabolism
sscv05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
125977207 (hcfc1a)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
125977207 (hcfc1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
125977207 (hcfc1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sscv01009
]
125977207 (hcfc1a)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sscv03036
]
125977207 (hcfc1a)
03029 Mitochondrial biogenesis [BR:
sscv03029
]
125977207 (hcfc1a)
Protein phosphatases and associated proteins [BR:
sscv01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125977207 (hcfc1a)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
125977207 (hcfc1a)
HMT complexes
COMPASS/SET1 complex
125977207 (hcfc1a)
MLL-HCF complex
125977207 (hcfc1a)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
125977207 (hcfc1a)
Mitochondrial biogenesis [BR:
sscv03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
125977207 (hcfc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Kelch_HCF
Kelch_KLHDC2_KLHL20_DRC7
Beta-prop_FBX42
Beta-prop_ATRN-LZTR1
Kelch_1
fn3
Kelch_FKB95
Motif
Other DBs
NCBI-GeneID:
125977207
NCBI-ProteinID:
XP_049589475
LinkDB
All DBs
Position
11:3896490..3908991
Genome browser
AA seq
1719 aa
AA seq
DB search
MSEVMSVPGSVVTGTSVSVLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGI
VDELHVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQA
SRWEWKKLKAKNPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYI
LELRAGSSVVAWDIPITYGVLPPPRESHTAVVYTEKTSRKSRLIIYGGMSGCRLGDLWTL
DIDTLTWNKPSVSGTAPLPRSLHSATTITNKMYVFGGWVPLVMDDVKVATHEKEWKCTNT
LACLNLDSMCWETVLMDTLEDNIPRARAGHCAVAINSRLYVWSGRDGYRKAWNNQVCCKD
LWYLETERPHAPARVQLVRANTNSLEVSWGAVSTADTYLLQLQKYDIPATPAAASPVMSS
IPSQPITSPKGPSPAAAAPSPQTLSQAAVLKVAAQQSATGASLVTVRPSQPGKSPVTVTS
LPPGVRMVVPAQATQGSPIGSSPQMSGMAALAAAAAATQKIPPASGGTVLNVPAGATILK
TVAVSPGTTTVKVASPVMVSNPATRMLKTAAAQVGTAGTSSPTTTTRPIITVHKSGAVTL
AQQAQVVTTVMGGVTKTIALVKSPLTMGSGGTLISNLGKMMSVVQTKPVQTSAVTGQAST
NPLTQIIQTKGALPAGTILKLVTAADGKPATIITTSQAGGAGNKPTILNISGVSSNASKQ
GPTIIKSIPMSAIMTQPGSTGVTSSTGMKTPFTILTTKVMTTGTPGKIITAVPKLGTAAG
QQGLTQVVLKGAPGQPGTILRTVPMSTVGGVRLVTPVTVSAVKPTVTTLVVKGTTGVTSL
GTVTGTVSTSLAGNTVDTTNASLVTPITTLGTIATLSNQVISSPAITVSAAQTTLTSATT
LPASTITVQNQPTQVTLITTPSGVEAQPVQDLPVSILASPTSEQPSSSEAGAAGDGSGTV
TLVCSNPPCETHDTGTTNTATTSSATMGVEQVCSNPPCETHETGTTATATTSSAPMGTGQ
VCSNPPCETHETGTTNTATTASSNMPALLMCSNPPCETHETGTTNTATTASASMGGGIPQ
VCSNPPCETHVTGTTNTSTQASSNMSESQTTGTTQSVCSNPPCETHETGTTNTPSTATSN
MGGDQTSSATSAVQRVCSNPPCETHETGTTNTATTATSNLETGEGTAAQQTDEVTEGTSS
TEEASSTAAPVSTTQGRAITTVTQSTPAPGPSVPSIASITEGVSAEASSTEEPMQTEATP
SAEDAPAEEGATPMETQAEGDAAAVATATTLNLPSELMSEGQGATLMVTGLSDEELAVTA
AAEAAAQAAATEEAQALAIQAVLQAAQQAVMNEGDGAGEGQQTTTIPIMLTQQELAALVQ
QQQQLQEAQAAAQQGAVDTSMPTEGLAPADSLNDPSVESNGHSEMAAAVTSAVAALLPRT
TAETLAPSSTFAPVVSVSSPAKLQAAAALAEVANGIEGEKQAPQPTPVKPAVKKENQWFD
VGIVKVTNMVVTHFYVPADDSQGDDDSGVIPDYGQMKKMELQPGTAYKFRVAGINACGRG
AFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQSNQTA
EAKASTPAQLAFMRVYCGPNPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQ
VRWLQESGKDGASAKPAAKRPGTSPDTKTTGPKKARTDQ
NT seq
5160 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagtcatgtctgtccctggttccgtggtgactgggacctcggtgtcggttctg
caaccgcggtggaaacgggtcctcggatggtcgggtcctgtaccccggcccagacatgga
cacagagccgtggcgatcaaggagctgatggttgtttttggcggaggaaacgaggggata
gtggatgaattacatgtctacaataccgctaccaaccagtggtttatccctgctgtccgt
ggtgacattccacctggctgtgccgcgtatggttttgtctgtgatggcacaagattactg
gtgtttggtggtatggtggaatatggaaagtacagcaatgatctctacgaactacaggcc
agccgatgggagtggaaaaaactgaaagcaaaaaaccccaaaaatggccctcctccctgt
ccacgtctgggtcacagtttttccctggtgggaaacaaatgttacttatttggtggactt
gccaatgacagtgaggaccccaaaaacaacattcccagatacctgaatgatttgtacata
ctcgagcttcgtgctgggtccagcgtcgttgcgtgggatattccaatcacatatggagtc
ctgcctcctcctcgcgagagccacactgcagtggtttacacagaaaagacaagtagaaaa
tctcgactgatcatctacgggggaatgagtggatgtcgccttggagatctgtggactctt
gatattgataccctaacatggaacaaaccatcagtgagcggcacagcacctcttcctagg
agtctgcactctgccacaaccatcacaaataagatgtacgtttttggcggctgggttcct
ttggtaatggatgatgtcaaagtggccacacatgagaaagagtggaaatgcacaaacacc
ctcgcctgtttgaatctcgactctatgtgctgggagacagtattgatggacacccttgaa
gacaacattcccagggcccgtgctggccactgtgctgtggctatcaattccagactctat
gtttggagcggccgtgatggataccgtaaagcatggaacaaccaagtttgttgtaaagac
ctctggtatctagaaaccgagcggccacatgcccctgctcgggtgcagctggttcgtgcc
aataccaactccctcgaagtgagctggggtgcagtttccactgcagacacatacttgttg
cagctgcagaaatacgacatccccgcaacaccagctgcggcctcgccagtcatgagctca
atcccctcgcaacccatcacctctcctaaaggtccctctccggctgctgccgcaccctct
ccacagactctgtcgcaagccgctgtattgaaggttgctgcccagcaatctgcgacaggc
gcatctctcgttacagtccgcccaagccagcctgggaaatctcccgtcactgtgacctcc
cttcctcctggtgtcagaatggttgtgcctgcccaggccacccaaggctcgccaattgga
agtagccctcagatgagcggcatggcagcattagctgctgcagccgcagcaacacagaag
attccgccggcatctggtggaacagtactcaatgttcctgcaggtgccacaattctcaaa
acagtcgctgtttcccctggcaccaccacagtaaaagttgcttccccagtcatggtcagc
aaccctgccacacgcatgctgaagactgctgcagctcaagtgggcacagccggtacatcc
tcccccaccactaccaccaggcccatcatcactgtgcacaagtctggtgcagtcactctg
gctcagcaggcccaggtggtgaccactgtgatgggaggagttaccaagaccatcgccttg
gtcaagagtcctctcaccatgggcagtggtggcactctgatctccaaccttggaaagatg
atgtctgtggttcaaaccaaaccagtgcagacatcagcagtcacaggccaggcttccacc
aaccctctcactcaaataattcagacaaagggtgctctgccagccggcaccattctgaag
ttggtgaccgctgcggatgggaagcctgccacgatcatcaccacctcccaggccggaggc
gctggaaacaagcccacgattcttaacatcagtggcgtctcttcaaatgcctctaaacag
ggccctactattattaaaagcatccccatgtcagccattatgacccaaccaggatcaaca
ggtgtaacaagcagtactggaatgaagacgccctttacaatccttacaactaaggtgatg
accactggaacacctggcaaaattatcactgcagtacccaagctcggaacggcagctggc
caacaaggattgacacaggtggttttgaagggcgcgccaggacagccagggacaattttg
cgcactgtacccatgagcacagttggcggcgttcgacttgttacgccagtgaccgtgtct
gctgttaaacccactgtcacaaccctggttgtcaagggaacaactggtgtgacctcactt
ggcacagtgactggtacagtctccacaagcttggccggcaacactgtggacacgaccaac
gcatctctggttacgcccatcaccacattgggcaccattgctaccctgtccaatcaggtc
atcagttcacctgcgataaccgtgtctgctgcccagaccaccttgacgtcggcaaccaca
ctgcccgcgtccaccataacagtgcagaaccagcccactcaggtcactctgatcacaact
cccagtggcgttgaagcccagccagtgcaggatctgccagtgtcgatcctggcttcaccc
acttctgagcagcctagctcttctgaggctggagctgctggcgatgggtctgggaccgta
acattggtctgctctaacccaccatgtgagacgcatgacacaggcacgactaacacggcc
acaacttcgtccgctaccatgggcgtagagcaagtttgctctaatcccccatgtgaaacg
catgaaacgggaaccaccgccacagccaccacctcctccgctccaatgggaacagggcag
gtctgctcaaaccctccttgcgagacccacgaaacgggaaccaccaacacggctacgacg
gcctcatcaaatatgcctgctctcctcatgtgctccaacccgccatgcgagacccatgaa
acgggcacaaccaacacagcaaccacagcatcagccagcatgggtggcggaattccgcag
gtgtgctccaatccgccctgcgagactcacgtgaccggcaccaccaacacatccacccag
gcgtcctccaacatgagcgaaagccagaccaccggcacaacgcagagtgtttgctctaat
ccgccttgtgaaacccacgagaccgggacaaccaacacgccatcgacggccacttccaac
atgggaggagaccaaaccagctcagcaaccagtgccgttcaaagagtttgctctaaccca
ccttgcgaaacacatgagactggtaccaccaacaccgccaccactgccaccagcaatctt
gagacaggagaaggcacagcagcccagcagacagatgaggtaactgaaggcaccagcagc
actgaagaagcctcttccactgcagcaccggttagcaccacccagggcagggccatcact
actgtcactcagtccacgccagcacctgggccatccgtaccttcgatcgcatcaatcaca
gagggggtgagcgccgaagccagctccacagaagaacccatgcagactgaagcgactcca
tcagcagaagatgcaccagcagaggagggagccactccgatggaaactcaggcagaagga
gacgcagcagccgtagccacagccacaaccttgaacctgccatctgagctcatgtctgag
ggccagggggccacgctgatggtcacagggctatcggacgaggagttagctgtcacagct
gcggcagaggccgctgctcaggcagcggcaactgaagaagctcaggccctggccatacaa
gccgtcctccaggccgcacagcaagctgtgatgaacgaaggcgatggcgccggagaaggc
cagcaaaccaccaccattcccatcatgctgacacagcaggagcttgcggcgctggttcag
cagcagcagcaacttcaggaggcccaggctgccgcccagcagggtgccgtagacacaagc
atgcccaccgagggtctcgctcctgctgacagcctcaacgacccctcggtggagagcaac
ggacacagcgagatggctgcggcagtaacaagtgctgtggccgccctactgccacgcacc
accgccgagacacttgctccttcgagtacatttgcaccggttgtgtcggtgagcagtcca
gccaagttgcaagccgcggctgcgctagctgaagtagccaatggcattgagggagagaag
caagcccctcagcccactcctgtgaagcctgctgtgaagaaagagaaccaatggtttgat
gttggaattgtcaaagtgacaaatatggttgtcactcacttctacgtgccagcagatgat
tctcaaggagatgacgattctggagtcattccagactacggtcagatgaagaaaatggag
cttcagcccgggacagcatacaagttccgcgttgctggcatcaatgcttgtggccgcgga
gccttctcggagatatccgcttttaagacttgtttgccgggattcccaggcgcaccgtgt
gccatcaaaatcagcaagagccctgatggcgctcacctgacctgggagccgccctctgtg
acgtcaggcaagatcattgagtattcggtgtacttggcaatccagagcaaccagacagcc
gaggccaaggcctccaccccggcccagttggcctttatgcgcgtgtactgtggacccaac
ccctcttgcctggtgcagtcttccagcctgtccaacgcccacatcgactacaccaccaag
ccggccatcatcttccgcatcgccgcccgaaacgagaagggctacggtccagccactcaa
gttcgatggctgcaggaatctggcaaagacggtgcctctgcaaaaccagcggccaaaaga
ccgggcacctctcctgatactaagactactggtccaaagaaagcaaggacggaccagtga
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integrated database retrieval system
